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Report for CCDS22951.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22951.3 Public Mus musculus 9 Arhgap32 23 108 98 CCDS HistoryNCBI Gene:330914Re-query CCDS DB by CCDS ID:22951.3Re-query CCDS DB by GeneID:330914See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 22951.1
This CCDS represents the shorter (or RICS) isoform encoded by the Arhgap32 gene. Another isoform, PX-RICS, with a longer N-terminus also exists. Both isoforms are conserved between mouse and human and have been described in the literature, including in PMIDs 17663722, 16716191, 12857875 and 12531901. Although there is evidence for the existence of the longer isoform in mouse, the 5' exons encoding it lack publicly available mouse transcript support, and it is therefore not yet represented in the CCDS set.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22951.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168954.8 ENSMUSP00000128448.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168954.8Link to Ensembl Protein Viewer:ENSMUSP00000128448.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168954Re-query CCDS DB by Protein ID:ENSMUSP00000128448
Original member Current member EBI ENSMUST00000182802.7 ENSMUSP00000138145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182802.7Link to Ensembl Protein Viewer:ENSMUSP00000138145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182802Re-query CCDS DB by Protein ID:ENSMUSP00000138145
Original member Current member NCBI NM_177379.5 NP_796353.3 Accepted alive Link to Nucleotide Sequence:NM_177379.5Link to Protein Sequence:NP_796353.3Re-query CCDS DB by Nucleotide ID:NM_177379Re-query CCDS DB by Protein ID:NP_796353Link to BLAST:NP_796353.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796353.3 1740 Q811P8-2 1740 100% 0 0

Chromosomal Locations for CCDS 22951.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32239306 32239411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32245152 32245254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32245918 32246062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32246447 32246529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32247108 32247215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32247486 32247631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32248380 32248575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32250642 32250787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32254067 32254138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32255174 32256058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32256713 32257698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 32258902 32261148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5223 nt):
ATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTG
ACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCAT
CGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGT
CATGAATTTGATTCTGAGCATGTCCCCGACCTGACAAAAGAACCTTATGTTCAAGACATCCATTCTGTGG
GCTCCCTCTGTAAGCTGTACTTCCGAGAACTCCCAAACCCTCTGCTCACCTACCAGCTATACGAGAAGTT
CTCTGATGCTGTTTCAGCAGCAACGGATGAAGAACGGTTGATAAAAATCCATGATGTCATCCAGCAACTC
CCCCCACCACACTATAGAACCCTGGAGTTCCTGATGAGACACCTGTCTCTTCTAGCAGACTATTGCTCCA
TCACAAATATGCATGCGAAAAACCTTGCCATTGTGTGGGCACCAAACCTGCTGAGATCAAAGCAGATAGA
GTCAGCTTGCTTCAGTGGGACAGCAGCTTTCATGGAAGTGAGGATTCAGTCTGTGGTTGTTGAATTCATT
CTCAATCATGTGGATGTGCTCTTCAGTGGCAAAATCAGCGCTGTCATGCAGGAAGGAGCAGCTTCTCTGT
CAAGGCCCAAGTCCCTGCTGGTCTCGTCTCCATCTACCAAGCTGCTGACATTGGAGGAAGCCCAGGCAAG
GACGCAGGCTCAGGTCAGTTCTCCTATTGTGACGGAAAATAAGTACATCGAAGTCGGAGAAGGGCCTGCT
GCGCTGCAAGGGAAGTTTCACACCGTCATTGAGTTCCCACTTGAAAGAAAGAGGCCTCAGAATAAGATGA
AAAAATCTCCCGTTGGCAGCTGGCGTTCCTTTTTCAATTTGGGGAAGTCCTCTTCTGTCTCCAAACGCAA
GTTGCAGCGTAATGAAAGTGAGCCCTCAGAAATGAAAGCCATGGCTTTGAAAGGTGGCAGGGCAGAAGGA
ACCCTCCGCTCAGCTAAAAGTGAAGAGTCCCTTACTTCTCTCCATGCAGTTGACGGTGATTCCAAGTTGT
TCCGACCTAGAAGACCCAGATCCAGCAGCGATGCGCTCTCTGCCTCTTTCAATGGCGACGTGCTGGGGAA
CCGGTGCAATTCCTATGACAATCTGCCCCACGACAACGAGAGTGAAGAGGAAGTGGGGCTGCTCCACATT
CCAGCTCTTGTGTCTCCTCATTCGGCTGAGGATGTTGACTTGAGTCCACCAGACATCGGAGTGGCCAGTC
TGGACTTTGATCCCATGTCATTTCAATGTAGTCCTCCAAAAGCTGAGTCAGAGTGTCTGGAGAGTGGTGC
TTCCTTTCTGGATTCATTAGGTTATACCAGGGATAAACTGAGTCCCAGTAAGAAGGATGCAGAAGCAGGT
GGTAGCCAGTCACAGACTCCAGGAAGCACCGCAAGTTCCGAACCTGTATCTCCAGTCCAGGAGAAACTGA
GTCCGTTTTTCACCCTGGACTTGAGCCCCACTGACGACAAGTCTTCTAAGCCATCTTCATTTACAGAAAA
GGTTGTTTATGCTTTCTCTCCGAAGATTGGGCGGAAGCTAAGCAAATCTCCTTCCATGAACATATCTGAG
CCTATTTCAGTGACTCTCCCACCTCGGGTATCAGAAGTCATCGGTACGGTCTCCAATACTGTAGCTCAGA
ATGCATCACCTACATCTTGGGACAAAAGTGTGGAAGAAAGAGATGTCATAAATAGATCCCCCACCCAGCT
GCAGCTAGGAAAGATGAAAGCAGGTGAGAGAGAGGCACAGGAGACCTGTGAACCAGAAGCACAGCCCCTG
GAACAGGGGGCAGCTGAAGAAGTAGAGTTGCCAGGGACAGAGGAGCGGCCTGTCCTGAGCAGTCAGAGCA
AGGCTGTACCGTCTGGACAGAGTCAGACAGGAGCAGTTACCCATGACCCCCCTCAGGATCCCGTTCCTGT
CAGTTCAGTCTCTCTTATCCCACCACCACCGCCTCCGAAAAATGTCGCCCGAATGTTGGCACTAGCGTTA
GCTGAGTCTGCACAGCAAGCCTCAAGTCAGACACTGAAGAGACCAGGGGCTTCCCAGGCTGGGTGCACTA
GTTATGGAGACACGGCAGTCGTTCCATCTGAAGAGAAGCTGCCTAGTTCCTACTCTAGCCTTACTCTAGA
TAAAACCTGTTTCCAAACGGACCGGCCAGCAGAGCAGTTCCACCCGCAGATCAATGGACTCGGAAACTGT
AACCAGCCTCTCCCTGAGGCAGCAGCTATGGGAGGTCCCACCCAGTCCAACACAACTGACTCTGGGGAGC
AACTCCACCAAGTAGACTTAATAGGGAATTCGCTACATCGAAACCATATATCTGGGGATCCAGAAAAGGC
TAGAAGCACTTCAGCTCCCTTAACAGACTCAGAGAAGTCTGATGATCATGGAAGTTTCCCTGAAGACCAC
GCTGGGAAGAGCAGCGTGTCCACTGTCTCCTTTTTGGAGCAGGACCAGTCTCCACTCCATTTCTCCTGTG
GAGATCAGCCCCTCTCTTACCTTGGTACCAGTGTGGATAAACCCCACCATTCCTCAGAACTTACAGACAA
ATCTCCCATGCCTTCTACTTTGCCTAGGGACAAAGCCCACCACCCTCTCTCTGGGTCCCCTGAAGAGAAT
TCCAGCACAGCCACCATGGCTTACATGATGGCAACTCCAGCAAGAGCGGAACCGAGCAACAGCGAGGCCA
GCAGGGTCCTGGCTGAGCAGCCCTCGGCTGCTGATTTTGTGGCTGCCACCCTTCAGCGCACGCACAGAAC
TAATCGGCCCCTCCCTCCACCTCCTTCCCAGAGGCCTGCAGAGCAGCCACCAGTTGTGGGGCAGGTACAA
GAAGCACCAAGTATAGGATTAAATAATTCCCACAAGGTCCAGGGAACGGCTCCAGCTCCCGAGAGGCCAC
CTGAGTCTCGGGCCATGGGTGACCCCGCACCCATCTTCCTCAGTGATGGCACTGCTGCTGCCCAGTGTCC
CATGGGCGCCTCTGCTCCTCAGCCTGGACTGCCTGAGAAGGTTCGGGAAAGCAGCAGGGCTCCACCACTC
CACTTACGTGCTGAGTCTTTTCCTGGCCATTCCTGTGGCTTTGCTGCCCCAGTTCCCCCAACACGGACAA
TGGAGAGCAAGATGGCTGCTGCCTTGCACTCCAGCGCTGCAGATGCCACCAGCAGTTCAAATTACCACTC
CTTTGTCCCTTCGTCAGCCTCAGTGGATGATGTGATGCCCGTGCCACTCCCCGTCTCACAGCCTAAGCAT
GCTTCTCAGAAGATAGCCTATTCCTCCTTTGCTAGGCCTGATGTCACCGCAGAGCCCTTTGGTCCAGAAA
ACTGTTTGCATTTCAATATGACTCCAAACTGCCAGTTTCGCCCCCAGAGTGTTCCTCCACACCACAATAA
GTTGGAGCCACATCAGGTATATGGTGCCCGGTCAGAGCCACCAGCCTCCATGGGTCCTCGTTATAACACC
TATGTGGCGCCGGGAAGAAACATGTCTGGACACCACTCCAAGCCGTGTAGTCGGGTTGAGTATGTCTCTT
CTCTGGGCTCCTCGGTTAGGAATCCTTGTTGCCCTGAAGACATTCTACCTTACCCTACCATCCGGAGGGT
ACAGTCCCTCCATGCACCCCCACCTTCCATGATCCGCTCTGTTCCCATTTCACGGACAGAAGTTCCCCCA
GATGATGAACCAGCCTACTGCCCAAGACCAGTCTACCAGTATAAGCCATACCAGTCCTCCCAGGCCCGCT
CAGACTATCACGTAACTCAGCTTCAGCCTTACTTTGAGAATGGACGGGTCCATTATCGCTATAGTCCGTA
CTCCAGCTCCTCCAGCTCCTATTACAGTCCTGAGGGGGCCTTGTGTGATGTCGATGCCTATGGCACAGTC
CAGCTGCGGCCCCTCCACCGCCTGTCCAGTCGGGACTTTGCTTTCTACAATCCAAGGCTACAAGGAAAGA
ACGTGTACAACTATGCTGGTTTGCCTCCACGCCCACGGGCCAATGCAACTGGCTATTTCTCTGGTAATGA
CCATAATGTAGTCACTATGCCCCCCACTGCTGACGGAAAGCACACCTACACCTCATGGGACCTTGAGGAC
ATGGAAAAATACCGCATGCAGTCCATCCGCCGAGAGAGCCGAGCACGGCAGAAGGTAAAAGGGCCTATCA
TGTCGCAGTATGACAACATGACACCAGCTGTGCAAGAAGACTTGGGAGGGATCTATGTCATCCATCTGCG
CAGCAAATCAGATCCTGGGAAAACTGGACTTCTCTCTGTGGCAGAGGGGAAAGAGGGACGGCACCCAGCC
AAGGCTGTCAGTCCTGAGGGGGACGAGCGTTTCTACAGGAAGCACCCAGAGTCCGAATTTGACAGAGCCC
ACCATCATGGAGGGTATGGCAGCACACAGGCAGAAAAGCCATCCCTCCCGCAGAAGCAAAGCAGCCTTAG
GAACAGAAAGCTTCACGATATGGGTTGTAGCCTCCCAGAGCACAGGGCGCATCAGGAAGCAAGCCATAGG
CAATTATGTGAATCAAAAAATGGACCACCTTATCCCCAGGGAGCTGGCCAGTTAGATTATGGGTCCAAAG
GGATGCCAGACACTTCTGAGCCAAGCAACTACCATAACTCTGGGAAATATATGACATCAGGGCAGGGGTC
TCTAACCCTGAACCACAAGGAAGTGAGGCTTCCCAAAGATCTGGACAGACCTCGAGCCAGGCAGCCACCT
GGCCCTGAGAAACACTCCAGAGACTGCTACAAGGAGGAGGAACACTTCTCTCAGTCTATGGTCCCACCCC
CCAAACCAGAGAGGAGTCACAGCCTAAAACTTCACCATACCCAGAACCTGGAGAGGGACCCCAGCGTGCT
ATACCAGTATCAGACACACAGCAAGCGCCAGAGCAGCATGACTGTTGTGTCCCAGTATGATAACCTGGAG
GATTACCACTCCCTGCCCCAGCACCAGCGAGGAGGCTTTGGAGGGGCGGGCATGGGGGCCTATGTGCCCT
CTGGCTTTGTCCATCCACAGAGCAGGACATACGCCACAGCATTGGGTCAGGGGGCCTTCCTGCCCACAGA
GTTGTCCTTGCCACATCCCGACACGCAGATCCATGCAGAATGA

Translation (1740 aa):
MKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLR
HEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQL
PPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFI
LNHVDVLFSGKISAVMQEGAASLSRPKSLLVSSPSTKLLTLEEAQARTQAQVSSPIVTENKYIEVGEGPA
ALQGKFHTVIEFPLERKRPQNKMKKSPVGSWRSFFNLGKSSSVSKRKLQRNESEPSEMKAMALKGGRAEG
TLRSAKSEESLTSLHAVDGDSKLFRPRRPRSSSDALSASFNGDVLGNRCNSYDNLPHDNESEEEVGLLHI
PALVSPHSAEDVDLSPPDIGVASLDFDPMSFQCSPPKAESECLESGASFLDSLGYTRDKLSPSKKDAEAG
GSQSQTPGSTASSEPVSPVQEKLSPFFTLDLSPTDDKSSKPSSFTEKVVYAFSPKIGRKLSKSPSMNISE
PISVTLPPRVSEVIGTVSNTVAQNASPTSWDKSVEERDVINRSPTQLQLGKMKAGEREAQETCEPEAQPL
EQGAAEEVELPGTEERPVLSSQSKAVPSGQSQTGAVTHDPPQDPVPVSSVSLIPPPPPPKNVARMLALAL
AESAQQASSQTLKRPGASQAGCTSYGDTAVVPSEEKLPSSYSSLTLDKTCFQTDRPAEQFHPQINGLGNC
NQPLPEAAAMGGPTQSNTTDSGEQLHQVDLIGNSLHRNHISGDPEKARSTSAPLTDSEKSDDHGSFPEDH
AGKSSVSTVSFLEQDQSPLHFSCGDQPLSYLGTSVDKPHHSSELTDKSPMPSTLPRDKAHHPLSGSPEEN
SSTATMAYMMATPARAEPSNSEASRVLAEQPSAADFVAATLQRTHRTNRPLPPPPSQRPAEQPPVVGQVQ
EAPSIGLNNSHKVQGTAPAPERPPESRAMGDPAPIFLSDGTAAAQCPMGASAPQPGLPEKVRESSRAPPL
HLRAESFPGHSCGFAAPVPPTRTMESKMAAALHSSAADATSSSNYHSFVPSSASVDDVMPVPLPVSQPKH
ASQKIAYSSFARPDVTAEPFGPENCLHFNMTPNCQFRPQSVPPHHNKLEPHQVYGARSEPPASMGPRYNT
YVAPGRNMSGHHSKPCSRVEYVSSLGSSVRNPCCPEDILPYPTIRRVQSLHAPPPSMIRSVPISRTEVPP
DDEPAYCPRPVYQYKPYQSSQARSDYHVTQLQPYFENGRVHYRYSPYSSSSSSYYSPEGALCDVDAYGTV
QLRPLHRLSSRDFAFYNPRLQGKNVYNYAGLPPRPRANATGYFSGNDHNVVTMPPTADGKHTYTSWDLED
MEKYRMQSIRRESRARQKVKGPIMSQYDNMTPAVQEDLGGIYVIHLRSKSDPGKTGLLSVAEGKEGRHPA
KAVSPEGDERFYRKHPESEFDRAHHHGGYGSTQAEKPSLPQKQSSLRNRKLHDMGCSLPEHRAHQEASHR
QLCESKNGPPYPQGAGQLDYGSKGMPDTSEPSNYHNSGKYMTSGQGSLTLNHKEVRLPKDLDRPRARQPP
GPEKHSRDCYKEEEHFSQSMVPPPKPERSHSLKLHHTQNLERDPSVLYQYQTHSKRQSSMTVVSQYDNLE
DYHSLPQHQRGGFGGAGMGAYVPSGFVHPQSRTYATALGQGAFLPTELSLPHPDTQIHAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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