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Report for CCDS23176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23176.1 Public Mus musculus 9 Pou2af1 23 108 98 CCDS HistoryNCBI Gene:18985Re-query CCDS DB by CCDS ID:23176.1Re-query CCDS DB by GeneID:18985See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034554.8 ENSMUSP00000034554.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034554.8Link to Ensembl Protein Viewer:ENSMUSP00000034554.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034554Re-query CCDS DB by Protein ID:ENSMUSP00000034554
Original member Current member NCBI NM_011136.2 NP_035266.1 Accepted alive Link to Nucleotide Sequence:NM_011136.2Link to Protein Sequence:NP_035266.1Re-query CCDS DB by Nucleotide ID:NM_011136Re-query CCDS DB by Protein ID:NP_035266Link to BLAST:NP_035266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035266.1 256 Q64693 256 100% 0 0

Chromosomal Locations for CCDS 23176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 51213786 51213801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51232232 51232362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51232848 51232890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51232978 51233243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51238066 51238380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGCTCTGGCAAAAATCCACAGCTCCAGAGCAAGCTCCTGCCCCACCAAGGCCATACCAGGGTGTTCGAG
TCAAGGAGCCAGTGAAGGAGCTACTGAGAAGAAAGCGTGGCCATACCAGCGTTGGGGCAGCTGGGCCACC
GACCGCGGTGGTACTGCCCCACCAGCCCCTGGCCACCTACAGCACTGTGGGTCCTTCCTGCCTTGACATG
GAGGTTTCTGCTTCCACAGTGACAGAGGAGGGAACATTATGTGCTGGCTGGCTCTCCCAACCTGCCCCGG
CCACTCTTCAGCCATTGGCTCCATGGACACCCTACACGGAGTATGTGTCCCATGAAGCTGTCAGCTGCCC
CTACTCCACTGACATGTACGTGCAGCCTGTGTGCCCCAGCTACACAGTGGTGGGACCCTCCTCGGTGTTG
ACCTATGCTTCTCCACCACTCATCACTAATGTCACGCCAAGAAGCACTGCTACACCCGCGGTGGGGCCCC
AGCTGGAGGGTCCCGAGCACCAGGCGCCCCTCACTTATTTCCCGTGGCCTCAGCCCCTTTCCACACTGCC
CACCTCCAGCCTGCAGTATCAACCTCCTGCCCCAACCCTGTCTGGGCCCCAGTTTGTCCAGCTCCCCATC
TCTATCCCAGAGCCAGTCCTTCAGGACATGGATGACCCCAGAAGGGCCATCAGCTCCCTGACCATTGACA
AGCTGCTTCTGGAGGAAGAGGAAAGCAACACGTACGAGCTCAACCACACCCTCTCCGTGGAGGGCTTTTA
G

Translation (256 aa):
MLWQKSTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGAAGPPTAVVLPHQPLATYSTVGPSCLDM
EVSASTVTEEGTLCAGWLSQPAPATLQPLAPWTPYTEYVSHEAVSCPYSTDMYVQPVCPSYTVVGPSSVL
TYASPPLITNVTPRSTATPAVGPQLEGPEHQAPLTYFPWPQPLSTLPTSSLQYQPPAPTLSGPQFVQLPI
SIPEPVLQDMDDPRRAISSLTIDKLLLEEEESNTYELNHTLSVEGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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