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Report for CCDS23501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23501.1 Public Mus musculus 9 Sema3b 23 108 98 CCDS HistoryNCBI Gene:20347Re-query CCDS DB by CCDS ID:23501.1Re-query CCDS DB by GeneID:20347See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073448.11 ENSMUSP00000073152.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073448.11Link to Ensembl Protein Viewer:ENSMUSP00000073152.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073448Re-query CCDS DB by Protein ID:ENSMUSP00000073152
Original member Current member EBI ENSMUST00000102529.9 ENSMUSP00000099588.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102529.9Link to Ensembl Protein Viewer:ENSMUSP00000099588.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102529Re-query CCDS DB by Protein ID:ENSMUSP00000099588
Original member Current member EBI ENSMUST00000102530.7 ENSMUSP00000099589.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102530.7Link to Ensembl Protein Viewer:ENSMUSP00000099589.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102530Re-query CCDS DB by Protein ID:ENSMUSP00000099589
Original member Current member EBI ENSMUST00000102531.6 ENSMUSP00000099590.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102531.6Link to Ensembl Protein Viewer:ENSMUSP00000099590.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102531Re-query CCDS DB by Protein ID:ENSMUSP00000099590
Original member Current member EBI ENSMUST00000102532.9 ENSMUSP00000099591.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102532.9Link to Ensembl Protein Viewer:ENSMUSP00000099591.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102532Re-query CCDS DB by Protein ID:ENSMUSP00000099591
Original member Current member NCBI NM_001042779.2 NP_001036244.1 Accepted alive Link to Nucleotide Sequence:NM_001042779.2Link to Protein Sequence:NP_001036244.1Re-query CCDS DB by Nucleotide ID:NM_001042779Re-query CCDS DB by Protein ID:NP_001036244Link to BLAST:NP_001036244.1
Original member Current member NCBI NM_001291537.1 NP_001278466.1 Accepted alive Link to Nucleotide Sequence:NM_001291537.1Link to Protein Sequence:NP_001278466.1Re-query CCDS DB by Nucleotide ID:NM_001291537Re-query CCDS DB by Protein ID:NP_001278466Link to BLAST:NP_001278466.1
Original member Current member NCBI NM_001291538.1 NP_001278467.1 Accepted alive Link to Nucleotide Sequence:NM_001291538.1Link to Protein Sequence:NP_001278467.1Re-query CCDS DB by Nucleotide ID:NM_001291538Re-query CCDS DB by Protein ID:NP_001278467Link to BLAST:NP_001278467.1
Original member Current member NCBI NM_001291539.1 NP_001278468.1 Accepted alive Link to Nucleotide Sequence:NM_001291539.1Link to Protein Sequence:NP_001278468.1Re-query CCDS DB by Nucleotide ID:NM_001291539Re-query CCDS DB by Protein ID:NP_001278468Link to BLAST:NP_001278468.1
Original member NCBI NM_009153.3 NP_033179.2 Updated not alive Link to Nucleotide Sequence:NM_009153.3Link to Protein Sequence:NP_033179.2Re-query CCDS DB by Nucleotide ID:NM_009153Re-query CCDS DB by Protein ID:NP_033179
Current member NCBI NM_009153.4 NP_033179.2 Accepted alive Link to Nucleotide Sequence:NM_009153.4Link to Protein Sequence:NP_033179.2Re-query CCDS DB by Nucleotide ID:NM_009153Re-query CCDS DB by Protein ID:NP_033179Link to BLAST:NP_033179.2

Chromosomal Locations for CCDS 23501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107598771 107599175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107599577 107599716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107599803 107599858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107599950 107600107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107600330 107600371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107600454 107600545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107600828 107601047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107601358 107601502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107601584 107601653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107601760 107601871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107601960 107602105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107602874 107602993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107603122 107603215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107603297 107603416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107603807 107603869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107604043 107604200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107604969 107605077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGGGCGGGCTGAGGCCGCCGCCATGATCCCAGGCCTGGCCCTTCTCTGGGTAGCAGGGCTAGGGGATA
CTGCCCCTAACCTTCCCCGCCTTCGGCTCTCCTTTCAAGAATTACAGGCCCGGCATGGTGTCCGAACCTT
CAGGCTGGAGCGGACCTGCTGTTATGAAGCCTTGCTGGTGGATGAGGAGCGTGGACGCCTGTTTGTGGGT
GCTGAGAACCACGTGGCTTCCCTCAGCCTGGACAACATCAGCAAGCGAGCCAAGAAGCTGGCCTGGCCCG
CCCCCGTGGAATGGCGTGAAGAATGCAACTGGGCAGGGAAGGACATTGGTACCGAGTGCATGAACTTCGT
GAAGCTGCTGCACACCTACAACCACACCCACTTGCTGGCCTGTGGCACAGGGGCTTTCCACCCAACCTGT
GCCTTTGTGGAGGTGGGCCACCGGCTGGAGGAACCCATGCTTCAACTGGACCGGAGGAAACTTGAGGACG
GCAAGGGGAAGACTCCTTATGACCCAAGGCATCGGGCTGCCTCGGTGCTGGTGGGGGAAGAACTGTATTC
TGGGGTGACAGCAGACCTTATGGGCCGGGACTTTACCATCTTTCGAAGCCTTGGTCAGAATCCGAGTCTC
CGAACAGAGCCCCATGATTCCCGCTGGCTCAATGAACCCAAGTTTGTCAAGGTCTTTTGGATCCCAGAGA
GTGAGAACCCTGATGACGATAAAATCTATTTCTTCTTCCGCGAGTCCGCTGTGGAAGCAGCACCAGCAAT
GGGGCGCATGTCTGTGTCTCGTGTTGGCCAGATCTGCAGGAATGACCTGGGTGGCCAGCGGAGCTTGGTC
AACAAATGGACCACATTTCTGAAGGCGCGGCTTGTGTGCTCAGTACCTGGAGTTGAGGGTGACACCCACT
TTGACCAACTTCAGGATGTTTTCCTTCTGTCCTCCCGAGACCGCCAGACACCTCTTCTCTATGCTGTCTT
CTCCACCTCCAGTGGTGTCTTCCAGGGCTCTGCTGTGTGCGTGTACAGCATGAACGATGTGCGCCGAGCC
TTCTTGGGACCTTTTGCTCACAAAGAGGGGCCTACACACCAGTGGGTGTCCTACCAGGGTCGTGTCCCCT
ACCCAAGACCTGGCATGTGCCCCAGCAAGACCTTTGGCACCTTCAGCTCCACCAAGGACTTCCCAGATGA
CGTTATCCAGTTTGCTCGGAACCACCCTCTCATGTACAACCCAGTCCTGCCCATGGGGGGGCGCCCTCTC
TTCCTACAAGTGGGAGCTGGGTACACCTTCACCCAAATCGCCGCAGACCGAGTAGCAGCTGCCGATGGAC
ACTACGATGTTCTCTTCATTGGTACAGATGTGGGCACAGTGCTGAAAGTGATCTCAGTCCCCAAAGGCAG
CCGACCTAATTCTGAAGGACTTCTCCTGGAAGAGCTGCAGGTGTTCGAGGACTCTGCCGCTATCACCAGC
ATGCAAATCTCCTCTAAAAGGCAACAACTCTACATAGCATCGCGCAGCGCAGTGGCCCAGATTGCTTTGC
ATCGCTGCACTGCCCTAGGCCGCGCCTGCGCAGAATGCTGCTTGGCCCGTGATCCTTACTGCGCCTGGGA
TGGATCAGCTTGCACACGCTTCCAGCCTACGGCCAAGAGACGGTTCCGGAGGCAAGACATAAGGAATGGC
GACCCCAGCACCCTATGCTCTGGAGACTCTTCTCACTCTGTGCTGCTGGAGAAGAAGGTGTTGGGTGTGG
AGAGCGGCAGCGCGTTTCTGGAGTGTGAGCCCCGCTCGCTCCAGGCGCATGTGCAGTGGACCTTCCAAGG
TGCAGGGGAGGCAGCTCACACCCAGGTGCTGGCTGAGGAGAGAGTAGAGCGCACTGCGCGGGGGCTGCTG
TTGCGGGGGCTGCGGCGCCAGGACTCTGGCGTGTATCTTTGCGTCGCGGTTGAACAAGGCTTTTCACAAC
CACTGCGTCGCCTGGTGCTGCATGTGTTGAGTGCGGCGCAGGCTGAACGACTGGCACGGGCAGAGGAAGC
AGCCGCTCCTGCACCTCCTGGCCCTAAACTCTGGTACCGGGACTTTCTGCAGTTGGTGGAGCCAGGCGGT
GGCGGAGGTGCAAACTCCCTGCGAATGTGCCGCCCGCAGCCCGGGCACCACTCTGTGGCAGCAGATTCAC
GTCGTAAGGGTCGCAACAGACGGATGCATGTCTCTGAGCTCCGTGCTGAGCGTGGACCACGTAGTGCAGC
TCACTGGTGA

Translation (749 aa):
MGRAEAAAMIPGLALLWVAGLGDTAPNLPRLRLSFQELQARHGVRTFRLERTCCYEALLVDEERGRLFVG
AENHVASLSLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHTYNHTHLLACGTGAFHPTC
AFVEVGHRLEEPMLQLDRRKLEDGKGKTPYDPRHRAASVLVGEELYSGVTADLMGRDFTIFRSLGQNPSL
RTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPAMGRMSVSRVGQICRNDLGGQRSLV
NKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQTPLLYAVFSTSSGVFQGSAVCVYSMNDVRRA
FLGPFAHKEGPTHQWVSYQGRVPYPRPGMCPSKTFGTFSSTKDFPDDVIQFARNHPLMYNPVLPMGGRPL
FLQVGAGYTFTQIAADRVAAADGHYDVLFIGTDVGTVLKVISVPKGSRPNSEGLLLEELQVFEDSAAITS
MQISSKRQQLYIASRSAVAQIALHRCTALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRRQDIRNG
DPSTLCSGDSSHSVLLEKKVLGVESGSAFLECEPRSLQAHVQWTFQGAGEAAHTQVLAEERVERTARGLL
LRGLRRQDSGVYLCVAVEQGFSQPLRRLVLHVLSAAQAERLARAEEAAAPAPPGPKLWYRDFLQLVEPGG
GGGANSLRMCRPQPGHHSVAADSRRKGRNRRMHVSELRAERGPRSAAHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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