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Report for CCDS23969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23969.1 Public Mus musculus 10 Casp14 23 108 98 CCDS HistoryNCBI Gene:12365Re-query CCDS DB by CCDS ID:23969.1Re-query CCDS DB by GeneID:12365See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005488.8 ENSMUSP00000005488.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005488.8Link to Ensembl Protein Viewer:ENSMUSP00000005488.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005488Re-query CCDS DB by Protein ID:ENSMUSP00000005488
Original member Current member EBI ENSMUST00000219237.1 ENSMUSP00000151657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219237.1Link to Ensembl Protein Viewer:ENSMUSP00000151657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219237Re-query CCDS DB by Protein ID:ENSMUSP00000151657
Original member Current member NCBI NM_009809.5 NP_033939.1 Accepted alive Link to Nucleotide Sequence:NM_009809.5Link to Protein Sequence:NP_033939.1Re-query CCDS DB by Nucleotide ID:NM_009809Re-query CCDS DB by Protein ID:NP_033939Link to BLAST:NP_033939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033939.1 257 O89094-1 257 100% 0 0

Chromosomal Locations for CCDS 23969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78713337 78713441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78713990 78714093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78714248 78714397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78714935 78715160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78715261 78715410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78715820 78715858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGAGTCAGAGATGAGTGATCCTCAGCCATTGCAGGAGGAAAGATATGATATGTCAGGTGCCCGCCTGG
CCCTGACGCTGTGTGTCACCAAAGCCCGGGAGGGTTCCGAGGTAGACATGGAGGCCCTGGAACGCATGTT
CCGTTACCTGAAATTTGAAAGCACCATGAAGAGGGATCCCACCGCCCAGCAATTTCTGGAAGAGTTGGAT
GAATTTCAGCAGACCATAGATAATTGGGAAGAGCCTGTCAGCTGTGCCTTTGTGGTACTCATGGCACATG
GTGAGGAAGGCCTCCTCAAGGGAGAAGATGAGAAGATGGTCAGACTAGAAGACCTTTTTGAAGTCTTGAA
CAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGAGCAC
AGAGACCCCGGTGAGGAACTACGTGGAAATGAGGAACTAGGTGGAGATGAGGAACTAGGTGGAGATGAGG
TTGCTGTGCTCAAGAACAACCCCCAAAGTATCCCAACCTATACGGATACCCTCCACATCTACTCCACGGT
AGAGGGGTACCTCTCCTATAGACATGACGAGAAAGGCTCTGGCTTCATCCAGACCCTGACGGATGTGTTC
ATTCATAAAAAAGGATCCATCTTAGAACTGACAGAAGAGATCACCCGACTTATGGCAAACACGGAGGTGA
TGCAGGAAGGAAAACCAAGGAAAGTGAACCCTGAAGTCCAAAGCACCCTCCGGAAGAAGCTCTATTTGCA
ATAA

Translation (257 aa):
MESEMSDPQPLQEERYDMSGARLALTLCVTKAREGSEVDMEALERMFRYLKFESTMKRDPTAQQFLEELD
EFQQTIDNWEEPVSCAFVVLMAHGEEGLLKGEDEKMVRLEDLFEVLNNKNCKALRGKPKVYIIQACRGEH
RDPGEELRGNEELGGDEELGGDEVAVLKNNPQSIPTYTDTLHIYSTVEGYLSYRHDEKGSGFIQTLTDVF
IHKKGSILELTEEITRLMANTEVMQEGKPRKVNPEVQSTLRKKLYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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