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Report for CCDS24257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24257.1 Public Mus musculus 10 Hsd17b6 23 108 98 CCDS HistoryNCBI Gene:27400Re-query CCDS DB by CCDS ID:24257.1Re-query CCDS DB by GeneID:27400See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026462.6 ENSMUSP00000026462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026462.6Link to Ensembl Protein Viewer:ENSMUSP00000026462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026462Re-query CCDS DB by Protein ID:ENSMUSP00000026462
Original member Current member EBI ENSMUST00000219447.1 ENSMUSP00000151556.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219447.1Link to Ensembl Protein Viewer:ENSMUSP00000151556.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219447Re-query CCDS DB by Protein ID:ENSMUSP00000151556
Original member Current member EBI ENSMUST00000219183.1 ENSMUSP00000151661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219183.1Link to Ensembl Protein Viewer:ENSMUSP00000151661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219183Re-query CCDS DB by Protein ID:ENSMUSP00000151661
Original member Current member NCBI NM_001359377.1 NP_001346306.1 Accepted alive Link to Nucleotide Sequence:NM_001359377.1Link to Protein Sequence:NP_001346306.1Re-query CCDS DB by Nucleotide ID:NM_001359377Re-query CCDS DB by Protein ID:NP_001346306Link to BLAST:NP_001346306.1
Original member NCBI NM_013786.3 NP_038814.1 Updated not alive Link to Nucleotide Sequence:NM_013786.3Link to Protein Sequence:NP_038814.1Re-query CCDS DB by Nucleotide ID:NM_013786Re-query CCDS DB by Protein ID:NP_038814
Current member NCBI NM_013786.4 NP_038814.1 Accepted alive Link to Nucleotide Sequence:NM_013786.4Link to Protein Sequence:NP_038814.1Re-query CCDS DB by Nucleotide ID:NM_013786Re-query CCDS DB by Protein ID:NP_038814Link to BLAST:NP_038814.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346306.1 317 Q9R092 317 100% 0 0
NP_038814.1 317 Q9R092 317 100% 0 0

Chromosomal Locations for CCDS 24257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127991248 127991465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127993596 127993759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127994329 127994587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127997698 127998010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTGGTTCTACCTGGTAACTCTTGTGGGCCTTTACCACCTTCTGCGTTGGTATCGTGAGAGGCAGGTGG
TGAGCCATCTCCAAGACAAGTATGTCTTCATCACGGGCTGTGACTCTGGCTTTGGGAACCTGCTGGCCAG
ACAGCTGGACAGGAGAGGCATGAGGGTATTGGCTGCATGTCTGACGGAGAAGGGAGCCGAGGAGCTGAGG
AACAAGACATCTGACAGGCTGGAGACAGTGATCCTGGATGTCACCAAGACAGAGAGTATTGTGGCAGCCA
CTCAGTGGGTGAAGGAGCGTGTTGGAGACAGAGGACTCTGGGGTTTGGTTAATAATGCAGGTGTGTTACA
ACCATTTGCCTACATTGAATGGTACAGACCAGAGGACTACATGCCTATCTTTCAAGTGAACCTCATTGGT
TTGACCCAGGTGACTATAAGCATGCTTTTCCTGGTAAAGAAGGCTCGGGGCAGGATCGTCAATGTCTCCA
GTGCTTTGGGAAGAGTTGCATTGTTTGGAGGATTCTACAGTTGCTCCAAGTATGGGGTTGAGGCATTTTC
AGATGTGCTAAGGCATGAGGTTCAAGATTTCGGGGTGAAAGTCAGCATAATTGAACCTGGGAGCTTCAAG
ACGGAAATGACAGATGCAGAGTTAACCATTGAGAGAACTAAGAAAGTCTGGGAAGCTGCCCCTGAGCACA
TCAAGGAATCCTACGGACAGCAGTTTTTTGACGACTTTTGCAGCACCACCAAACGAGAGTTGATGAAGTG
TAGCAGGAACCTGAGCCTAGTCACGGACTGCATGGAGCACGCCCTGACCTCCACGCATCCTCGCACCCGG
TACTCGGCTGGCTGGGATGCCAAGTTTTTCTTCATCCCTCTATCTTATTTGCCTGCGTCACTGGTAGACT
ACTTATTGGCCATATCTAGGGGCAAGCCAGCTCAAGCAGCCTGA

Translation (317 aa):
MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELR
NKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFAYIEWYRPEDYMPIFQVNLIG
LTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSKYGVEAFSDVLRHEVQDFGVKVSIIEPGSFK
TEMTDAELTIERTKKVWEAAPEHIKESYGQQFFDDFCSTTKRELMKCSRNLSLVTDCMEHALTSTHPRTR
YSAGWDAKFFFIPLSYLPASLVDYLLAISRGKPAQAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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