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Report for CCDS24434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24434.1 Public Mus musculus 11 Zpbp 23 108 98 CCDS HistoryNCBI Gene:53604Re-query CCDS DB by CCDS ID:24434.1Re-query CCDS DB by GeneID:53604See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020413.3 ENSMUSP00000020413.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020413.3Link to Ensembl Protein Viewer:ENSMUSP00000020413.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020413Re-query CCDS DB by Protein ID:ENSMUSP00000020413
Original member Current member NCBI NM_015785.2 NP_056600.1 Accepted alive Link to Nucleotide Sequence:NM_015785.2Link to Protein Sequence:NP_056600.1Re-query CCDS DB by Nucleotide ID:NM_015785Re-query CCDS DB by Protein ID:NP_056600Link to BLAST:NP_056600.1

Chromosomal Locations for CCDS 24434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 11282603 11282697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11352522 11352699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11403981 11404057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11408389 11408607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11415188 11415337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11418162 11418287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11459699 11459779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11462064 11462364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGTGTACCCAAGCTGGGTCCCAAGCTAGCACACCTCCCGCACATCACCCGAGCGGAAGTGGCGCGTCCG
TCGGTCCGTCCTTCCGGCCTGCCGTCTGCCAACTTCCGGCGGCGGGTGGGCGCGCGCCAGGTAACGACCT
TCTGCGCCGAGGCTCGGCCGTCGGCGGCGTGTGGATGGAGGCCTTGGCCCCGGGCCGGGCTCCGCGGGGC
CGGCGGCGGGCCGGGGCCTCGGGCTCCGTGCTCTCGCCGCTGTCGCTGGCCGCCGTCCTGCTCTGCGCCT
TGCTGCGGGCGCCCCCTGCAGTTGGACATTTGGCTCGACTGCCAAGAAGTATCCACTTGACTCAAGATTC
ACTGAAAATAGTGGGATCGACACATTTTCCTGTGAGCGTATATGTTATGCTTCATCAAAAGAGTCCACAT
GTGCTATGTGTAACCCAACGACTGAGAAATACAGAGCTGGTAGACCCATCATTCCAATGGCATGGGCCAA
AAGGAAAACTTGTTTCAGAAAATACCACTGCACAAGTGACCTCCACAGGAAGCCTCATATTTCAGAGCTT
TGAAGAGACCATGAGTGGGGTTTATACATGTTTCCTCGAGTATAAACCAACTGTAGAGGAATCTATTAAA
AATCTTCAACTGAAATACATTGTTTATGCTTATCGTGAACCTCGGTTTTATTATCAGTTCACAGCTCGAT
ACCATGCAGCTCCCTGCAACAGTATCTATAACATTTCTTTTGAGAAGAAACTTCTTCAGATTTTAAGTAA
GCTGGTTCTTGACCTTTCCTGTGAAATATCCTTGATTAAGTCTGAATGCCATCGTGTTAAAATGCAAAGA
GCTGGTTTGCAAAATGAATTGTTCTTCACATTTTCAGTTGCATCTATAGACACAGAAAAAGGATCCAAGC
CATGTACAGACCATAGTTGTGAAGCTTCCAAAAGATTATCTAAGGCTAAAAATCTCATAGAGAGATTCTT
CATTCAGCAAGTAGAAGTCCTGGGCAAGCGTGCGGAGCCACTGCCTGAGATATACTACATTGAGGGAACC
CTTCAGATGGTGTGGGTGAACCGCTGCTTTCCAGGGTATGGCATAAATGTCCTGAAGCATCCCAAGTGCC
CAGAGTGCTGTGTGGTCTGCAGCCCTGGATCCTTCAATCCCCGGGATGGAACTCATTGCCTCCAGTGCAA
CAACAGCCTGGTGTATGGAGCGAAGACATGCATGTAG

Translation (408 aa):
MCTQAGSQASTPPAHHPSGSGASVGPSFRPAVCQLPAAGGRAPGNDLLRRGSAVGGVWMEALAPGRAPRG
RRRAGASGSVLSPLSLAAVLLCALLRAPPAVGHLARLPRSIHLTQDSLKIVGSTHFPVSVYVMLHQKSPH
VLCVTQRLRNTELVDPSFQWHGPKGKLVSENTTAQVTSTGSLIFQSFEETMSGVYTCFLEYKPTVEESIK
NLQLKYIVYAYREPRFYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEISLIKSECHRVKMQR
AGLQNELFFTFSVASIDTEKGSKPCTDHSCEASKRLSKAKNLIERFFIQQVEVLGKRAEPLPEIYYIEGT
LQMVWVNRCFPGYGINVLKHPKCPECCVVCSPGSFNPRDGTHCLQCNNSLVYGAKTCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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