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Report for CCDS24456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24456.1 Public Mus musculus 11 Cep68 23 108 98 CCDS HistoryNCBI Gene:216543Re-query CCDS DB by CCDS ID:24456.1Re-query CCDS DB by GeneID:216543See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050611.13 ENSMUSP00000054943.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050611.13Link to Ensembl Protein Viewer:ENSMUSP00000054943.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050611Re-query CCDS DB by Protein ID:ENSMUSP00000054943
Original member Current member NCBI NM_172260.3 NP_758464.2 Accepted alive Link to Nucleotide Sequence:NM_172260.3Link to Protein Sequence:NP_758464.2Re-query CCDS DB by Nucleotide ID:NM_172260Re-query CCDS DB by Protein ID:NP_758464Link to BLAST:NP_758464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758464.2 733 Q8C0D9-1 733 100% 0 0

Chromosomal Locations for CCDS 24456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20230428 20230594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20236006 20236102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20238466 20238588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20239196 20240698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20241886 20242197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGCCCTGAGTGAAGATGAGGCTGAGGCAGAAGTGTCTGTCAACACAAAGGTCCCATCCTGTGGCAGGT
GGAACTCTGGGAAGCTGCTGCCCTCAGGGCTTGAACCAGATCAGCCCCTACATCTGGGTGTTGAGGGGGG
GCCACTGTGGAGGGCTGAAGCTGACCCTGGCTGCATCTCGGGAGTTTTCTTGTCACGGGTCCATACTGCC
AGCAAAGAACCAGTAGCAGATAGGTCTAAGCCTCCCCTCAGAGGCCCGCTTCCTTCTGCCAGTGTGGGCA
CTGGAGAGGTTTTACACTCTATGGGCAGCCAAATGGAGGAAGACAGGCTTCCTGCCTCCCAGGACCTACT
TCCAGCTCTTCAAGTCTTTGGAACTATAACTGTTTGCTCAGGACAGGAGGCTGACAGTGAAGACTTCCAG
GCTACGCTTGATCCATCTCAGGTGTTGGGCCTCAGCCAGCAACCACACACCTCAGGTCTCCCTCTCCCGC
CACAGTGGAAGTCCACGGTGAGCCCAGGTGCTCCTCAGCTTTCTAGCAGAAGCATCTCTGCCTCCTCGGT
GGGCAGCAGTCTTCAGGATCACCAAGAGAAGGCAGGACCTCAGAGGGCCTCTTTTGCCAATGTCTCCTCT
CCCGAGTTGACTGTACCCCAGGCAGCCCACTCTGTGGTGGGGGCAGGGCCTCCGCTCCAGGGGTCAGCAC
AGCCTCTGACCTCTGGCAGTGATGCTACAGGCCTGGGTAAGAGACACCTCTCCTTTCAGGCAGAATACTG
GGCCTGTGCGCTGCCAAATTCTCTGCCTCCTTCCCCTAACCGCCACTCCGCACTCTGGGACCCAAATAAA
GAGTATGAAGATCTGCTTGACTACACTTACCCACTGAGGCCTGGGCCTCAGCTCCCAAAGCAACCTGAAA
GTCATGTCCTGACTGAGCCTGTTCTGCAGGACTCAGGTGTAGATCTGGACAGTTTGTCTGTCTCCCCAGC
AAGTACTCTAAAGTCACCCACTAATGTCTCCCACAATTGCTCATCAGCAGAAGTGCCTACTCTGCCATTT
TCTGGAGCCAGAGAGTCATGTCTTAAGCGCTGGCCCTTGGGAATATTCCAGAAACAGGGTGGCACAAGCT
TGTCATCCTGGAACCAGCTTGCATCAACCCCTAGAGCCCCAGGCACTGAAGATGCTTCTTGGGAGAACAG
AGAGGCAGCCCTGAGGGGCACAGCGGAGGACTGCCTCCCTATAGGTGAGGACCTCCGAATGGGCTCTCCC
CAGCTGAAGACGAAGGAGAAAGAGCCACCCTTTCCCAGACAGAAGAGAGGCAGGCAGCATGTTAGCTGCC
CGGCCTGTGTGACGCCTGGATGGCCATCAGAAGAGGAGGTGGGAAGTGATGAGGAGTACCTTGCTCTGCC
CACCAGGCTGACTCAGGTCTCTAGTTTGGTGTCCTACTCAGGTGCCAGGCCCTCCTTTGTGAACCTACAC
ACTGGGGCTGCTGAGGAACACAGTTCACTACAAGTCTCAGACAGTGACAAGCCAGCCTCCCCCACATTGG
ACTCCAGCCACAGGAAGCATCCTTCTGGAACTTCCTTTCAAGGGCCTGTGGGCCAGAACCCCTGCTTCAG
GCATTCTATCCAGCCCCAGGACTCTAGAGGCAAAAGTAGTCTGATGAGTAACCAGACCCTCGGGGTCTCT
TCAAAACCACTGAAAACTCAGCCCGCCTCAAAAGCCATGACGGACAGGCGGCTGTTCTCCGAGCTAGTAG
CTGGAGAGACACTTCCCAGGACGACAGATGAGCAGGAGAAAGCTTCTCTAGTGCAGTGTGTGCAGACATT
TTGCTGTCGGCTGGAAGAGCTGATCTGCTGGTTGTATAATGTCACAGATGTTGCTGACCTCAGTGCTCCA
CCCAGGACCAGCCTTACAGGTCTCAAGTCTTCTCTGCAGCTTTACAGGCAATTTAAGAAAGATGTAGACG
AACATCAGTCCCTGACAGAGAGCGTCTTGGAGAAGGGAGAGATTCTTCTTCAGTGCCTGTTGGATAACAC
CCCAGTTTTAAAGGATGTCCTTGAGAGGATTGCAAAGCAGTCTGGTGAGCTGGAGAGCCGTGCAGATCAT
CTTTATGACTCTATCTTAGCCTCTTTGGACATGTTGGCTGGCTGCACCCTCATCCCTGACAACAGGCCAA
CAGCAGCAGAACACCCACATGAAGGGCTTTAA

Translation (733 aa):
MALSEDEAEAEVSVNTKVPSCGRWNSGKLLPSGLEPDQPLHLGVEGGPLWRAEADPGCISGVFLSRVHTA
SKEPVADRSKPPLRGPLPSASVGTGEVLHSMGSQMEEDRLPASQDLLPALQVFGTITVCSGQEADSEDFQ
ATLDPSQVLGLSQQPHTSGLPLPPQWKSTVSPGAPQLSSRSISASSVGSSLQDHQEKAGPQRASFANVSS
PELTVPQAAHSVVGAGPPLQGSAQPLTSGSDATGLGKRHLSFQAEYWACALPNSLPPSPNRHSALWDPNK
EYEDLLDYTYPLRPGPQLPKQPESHVLTEPVLQDSGVDLDSLSVSPASTLKSPTNVSHNCSSAEVPTLPF
SGARESCLKRWPLGIFQKQGGTSLSSWNQLASTPRAPGTEDASWENREAALRGTAEDCLPIGEDLRMGSP
QLKTKEKEPPFPRQKRGRQHVSCPACVTPGWPSEEEVGSDEEYLALPTRLTQVSSLVSYSGARPSFVNLH
TGAAEEHSSLQVSDSDKPASPTLDSSHRKHPSGTSFQGPVGQNPCFRHSIQPQDSRGKSSLMSNQTLGVS
SKPLKTQPASKAMTDRRLFSELVAGETLPRTTDEQEKASLVQCVQTFCCRLEELICWLYNVTDVADLSAP
PRTSLTGLKSSLQLYRQFKKDVDEHQSLTESVLEKGEILLQCLLDNTPVLKDVLERIAKQSGELESRADH
LYDSILASLDMLAGCTLIPDNRPTAAEHPHEGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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