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Report for CCDS24632.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24632.2 Public Mus musculus 11 Maml1 23 108 98 CCDS HistoryNCBI Gene:103806Re-query CCDS DB by CCDS ID:24632.2Re-query CCDS DB by GeneID:103806See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24632.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update adds a MamL-1 domain to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24632.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059458.4 ENSMUSP00000059210.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059458.4Link to Ensembl Protein Viewer:ENSMUSP00000059210.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059458Re-query CCDS DB by Protein ID:ENSMUSP00000059210
Original member Current member NCBI NM_175334.3 NP_780543.2 Accepted alive Link to Nucleotide Sequence:NM_175334.3Link to Protein Sequence:NP_780543.2Re-query CCDS DB by Nucleotide ID:NM_175334Re-query CCDS DB by Protein ID:NP_780543Link to BLAST:NP_780543.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780543.2 1020 Q6T264 1020 100% 0 0

Chromosomal Locations for CCDS 24632.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50257849 50258828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50260977 50261073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50263250 50263483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50265595 50267010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50291726 50292061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3063 nt):
ATGGTGCTACCCACCTGCCCCATGGCGGAGTTCGCGCTGCCGCGGCACAGCGCGGTCATGGAGCGCCTCC
GCCGGCGCATCGAACTGTGCCGGCGCCACCACAGCACCTGTGAGGCCCGCTACGAGGCTGTGTCTCCCGA
GCGCCTGGAGCTCGAGCGCCAGCACACCTTTGCCCTGCACCAGCGCTGCATCCAGGCCAAGGCCAAGCGC
GCCGGCAAGCACCGGCAGCCGCCGGCCGCCGCCACGGCCCCGGTTGCCGCTCCGGCCCCCGCCTCGGCCC
CGGCGGCCGCGCGCCTGGACGCAGCGGACGGCCCGGAGCACGGCCGCCCGGTCGCGCATCTTCATGATAC
AGTGAAGAGGAGTCTTGACAGTGCTGCCTCCCCTCAGAATGGCGATCAACCAAATGGCTACGGAGACTTG
TTTCCTGGGCATAAGAAGACACGCCGGGAGGCCCCTCTGGGGGTCAGTGTGTCTGCCAATGGGCTTCCTC
CTGCCTCGCCCCTGGGCCAGCCCGACAAGCCTTCAGGGGGAGACACCCTGCAGACCGCTGGGAAGCACTC
TCTGGGGCTCGATCCCATCAACAAGAAGTGTCTGGCAGACTCAGGCATCCACCTGAATGGAGGCAGCAAC
TCCAGTGAGCCCTTTCCTCTAAGCCTGAGTAAAGAACTCAAGCAGGAGCCAGTGGACGACCTGCCGTGCA
TGATCGCGGGCGCTGGAGGCTCCGTAGCTCAGAGCAACCTCATGCCGGACCTCAACCTTAATGAGCAGGA
GTGGAAGGAGCTCATCGAGGAGCTCAACAGGTCAGTGCCCGACGAAGACATGAAGGACCTGTTTACGGAG
GACTTTGAGGAGAAGAAGGATCCAGAGCCTCCTGGCTCTGCCACACAAACCCCCCTGGCCCAGGACATTA
ATATTAAGACTGAGTTCTCTCCAGCAGCTTTTGAGCAGGAGCAGTTAGGTTCTCCACAAGTAAGGGCTGG
GTCTGCAGGCCAGACCTTCCTAGGAGCCTCATCTGCCCCTGTGGGCACAGATTCTCCAAGCCTTGGGAGC
TCTCAGACTCTGTTTCACACAACTAGTCAACCTGGGGTGGATAATTCCAGTCCAAACCTGATGCCGGCAT
CAGCCCAGGCTCAAAGTGCACAAAGAGCCCTCACGAGTGTGGTATTACCTAGCCAGGGCCCAGGCGGGGC
CTCGGAGCTGTCCTCTGCTCACCAGCTCCAGCAGATAGCTGCCAAGCAGAAGCGCGAGCAGATGTTGCAG
AATCCCCAGCAAGCTGCCCCAGCACCCGGCCCAGGCCAGCTGGCCACGTGGCAGCAGGCAGGGCCCTCCC
ACAGTCCCTTAGATGTTCCTTATCCCATGGAGAAGCCTGCCAGCCCTTCTGGCTACAAGCAAGACTTTAC
CAACTCAAAACTGCTCATGATGCCCGGTGTGAACAAGAGTTCTCCTCGGCCAGGAGGCCCCTACCTCCAA
CCTAGCCACTCCAACCTGCTGAGTCACCAGTCACCAAGTAACTTGAATCAGAACCCCGTGAATAACCAAG
GGTCTGTGCTAGACTATGGCAATACAAAGCCCCTTTCTCATTACAAAGCAGACTGTGGCCAAGGTGGTCC
TGGGTCTGGCCAGAACAAACCAGCTTTGATGGCATATCTTCCCCAGCAGCTGCCCCATCTGAGTAACGAG
CAGAACTCCTTGTTTCTGATGAAACCAAAGTCAGGAAACATGCCCTTCCGGTCATTGGTTCCACCTGGCC
AGGAGCAGAACCCTTCCAGTGTCCCTGTAGCTGCCCCAGCTGCCAGTGTGGGAACCCAGCCTACTGTGTC
TGTGGCCAGCACTCACAACAGCTCGCCATACCTCAGCAGCCAGCAGCAGGCAGCTGTGATGAAGCAGCAC
CAGCTGCTCCTGGACCAGCAGAAGCAGAGGGAGCAGCAGCAGCAGCAGCTGCAGCAGCAGCAGTTCCTGC
AGAGGCAGCACCTCCTGGCTGAGCAGGAGAAACAACAGTTTCAGCGTCATCTGACCCGCCCACCCCCCCA
GTACCAAGACCCAACACAAAGCACCTTCCCACAACAGGTTGGACAGTTCACAGGACCTTCTGCTGCTGTG
CCTGGGATGAACAACTTGGGTCCGTCCAACTCCAGCTGTCCTCGAGTGTTCCCTCAGCCTGGGACTCTGA
TGTCCATGGGCCCTGGACATGCCCCTGTCTCCTCTCTCCCCTCCAGCTCAGGCCAGCAGGACCGTGGAGT
GGCCCAGTTTACTGGGTCCCAGAGTTTGCCTCAGAACAGCCTTTATGGCATGGCATCTGGCCTAGCCCAG
ATAGTTGCCCAGCCCCCACCACAGGCTACCAGCACACATGCCCACATTCCACGGCAGACCAACGTGGGCC
AGAACGCCTCCACCTCGGCTGCATATGGACAGAACTCTCTGGGGAGTGCCAGTCTTTCCCAGCAGCACAG
TAAGGGAACCCTGCCTCCTGGTTTAACAAAGCCACAAGTCCCAAGGGTGTCAGCAGCCATGGGAAGCCAG
AATGCCTCGTGGCAGCATCAGGGAATGCCAAACCTGAGCAGCCAGACGTCTGGGAACAGCAGTGTGAACC
CCTTCACTGCAGCTCCCAGTTTCCACATACAGCAAGCCCACCTGAAACTAGCTGGCCAGCAGTTCTCCCA
AGCCATGCCCAGCAGGCCCATGGCGCCTCTGAGTTCAGCAGGTGCAGCAGGGCCCATGCTGCCCCCAGTG
AGTGCACAGCAGAGGAACAGTGCCCCTGCATCTGCACCTCCCCAAGCAGCCCCGCAGCAGGGCTTGCCTG
GCTTAAGTCCTTCGGGGCCCGAGCTGGGGGCCTTCGGCCAGAGCCCCACCTCCCAGATGAGCGGCCGGCC
AGGGCTACACTGTGCGCAGGCTTACCCTGTGAGGACCATGGGCCAAGAGCTGCCCTTTGCCTACAGCGGG
CAGCCAGGTAGCAGTGGTCTGTCCAGTGTGGCTGGACACACTGACCTGATCGACTCGCTGCTGAAGAACA
GGACTTCTGAGGAGTGGATCAATGAATTGGATGATCTTTTAGGGTCACAGTAA

Translation (1020 aa):
MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALHQRCIQAKAKR
AGKHRQPPAAATAPVAAPAPASAPAAARLDAADGPEHGRPVAHLHDTVKRSLDSAASPQNGDQPNGYGDL
FPGHKKTRREAPLGVSVSANGLPPASPLGQPDKPSGGDTLQTAGKHSLGLDPINKKCLADSGIHLNGGSN
SSEPFPLSLSKELKQEPVDDLPCMIAGAGGSVAQSNLMPDLNLNEQEWKELIEELNRSVPDEDMKDLFTE
DFEEKKDPEPPGSATQTPLAQDINIKTEFSPAAFEQEQLGSPQVRAGSAGQTFLGASSAPVGTDSPSLGS
SQTLFHTTSQPGVDNSSPNLMPASAQAQSAQRALTSVVLPSQGPGGASELSSAHQLQQIAAKQKREQMLQ
NPQQAAPAPGPGQLATWQQAGPSHSPLDVPYPMEKPASPSGYKQDFTNSKLLMMPGVNKSSPRPGGPYLQ
PSHSNLLSHQSPSNLNQNPVNNQGSVLDYGNTKPLSHYKADCGQGGPGSGQNKPALMAYLPQQLPHLSNE
QNSLFLMKPKSGNMPFRSLVPPGQEQNPSSVPVAAPAASVGTQPTVSVASTHNSSPYLSSQQQAAVMKQH
QLLLDQQKQREQQQQQLQQQQFLQRQHLLAEQEKQQFQRHLTRPPPQYQDPTQSTFPQQVGQFTGPSAAV
PGMNNLGPSNSSCPRVFPQPGTLMSMGPGHAPVSSLPSSSGQQDRGVAQFTGSQSLPQNSLYGMASGLAQ
IVAQPPPQATSTHAHIPRQTNVGQNASTSAAYGQNSLGSASLSQQHSKGTLPPGLTKPQVPRVSAAMGSQ
NASWQHQGMPNLSSQTSGNSSVNPFTAAPSFHIQQAHLKLAGQQFSQAMPSRPMAPLSSAGAAGPMLPPV
SAQQRNSAPASAPPQAAPQQGLPGLSPSGPELGAFGQSPTSQMSGRPGLHCAQAYPVRTMGQELPFAYSG
QPGSSGLSSVAGHTDLIDSLLKNRTSEEWINELDDLLGSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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