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Report for CCDS24812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24812.1 Public Mus musculus 11 Rnf112 23 108 98 CCDS HistoryNCBI Gene:22671Re-query CCDS DB by CCDS ID:24812.1Re-query CCDS DB by GeneID:22671See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054927.13 ENSMUSP00000056464.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054927.13Link to Ensembl Protein Viewer:ENSMUSP00000056464.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054927Re-query CCDS DB by Protein ID:ENSMUSP00000056464
Original member Current member NCBI NM_009548.3 NP_033574.2 Accepted alive Link to Nucleotide Sequence:NM_009548.3Link to Protein Sequence:NP_033574.2Re-query CCDS DB by Nucleotide ID:NM_009548Re-query CCDS DB by Protein ID:NP_033574Link to BLAST:NP_033574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033574.2 654 Q96DY5-1 654 100% 0 0

Chromosomal Locations for CCDS 24812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61449407 61449877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61449967 61450041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61450190 61450243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61450318 61450487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61450585 61450705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61450828 61450902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61450978 61451034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61451321 61451371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61451744 61451848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61452013 61452141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61452260 61452466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61452628 61452913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61453428 61453496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61453619 61453659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61453796 61453849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGCCGAGGCCCGTCCTGTCAGTCACTGCTTTTTGTCATCGGCTTGGCAAACGGGAGAGCAAACGAAGCT
TCATGGGAAACAGCAGCAACAGTTGGGTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAGGCTGT
GCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGT
CCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGG
ACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCATCCCAGGCTGTGAGCTACCATGCTG
TCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTA
CCACAGCGGCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTAC
GAATCAATGCCTCCGGAGGCCTCATCCTCAGGATGGGCGCCATAAACCGTTGCCTGAAGCATCCACTGGC
CAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGAC
CACTTGCTCAGTGGCTTACCAAGCCTGGAATCTGGTGACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGC
CTGGGATCAGATGGGGCGCTAACGGCCTCACGAGGGGTATCTGGATGTGGAGTCACCCCTTCCTGCTGGG
AAAAGAGGGGAAGAAGGTGGCTGTGTTCTTAGTGGACACGGGGGATGTCATGAGCCCAGAACTGAGCAAG
GAGACAAGGGTCAAGCTCTGTGCTCTCACCATGATGCTCAGTTCCTACCAGATCCTGAATACCTCCCAAG
AGCTGAAGGATACCGATCTGGGCTATCTAGAGATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTA
TGGGATGGTACCAATCCAGCATCTGGATCTCTTAGTCCGAGACTCTTCCCATCATAATAAGTCAGGGCAA
GGGCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGA
AACGGGCCCGCTGTTACCTCCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAG
AGGCAACACAGAAGATGACTTCTCCCACCATTTCCGGGCCTACATCTTGGACGTGCTGAGCACAGCCCCT
CAGCACGCTAAGAGCCGCTGTCAAGGGTACTGGAGTGAGGGGCGTGCCGTGGCCAGGGGAGACAGACGCC
TGCTCACAGGGCAGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCTGGATGGGGAAGACTGGGCCCAG
TTTCAACTCTCCTGATGAGATGGCTGCTCAGCTCCATGATCTGAGGAAAGTGGAAGCCGCCAAGAAGGAG
TTCGAGGAGTACGTGAGACAGCAGGACATAGCCACCAAGCGCATCTTCTCTGCACTACGAGTCCTGCCTG
ACACGATGAGGAACCTCCTCTCTACCCAGAAGGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTTGTG
CAAGGAGAGAGAGCAGACCTTGGAGGCCCTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGCCTTCATGGAC
TCCTACACAATGCGCTTCTGTGGCCACCTGGCCGCGGTAGGGGGCGCTGTAGGTGCTGGGCTCATGGGCC
TGGCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGTTGGCTGCTGAGGCTGGGATGGTAGCAGC
TGGGGCCGCGGTGGGGGCCACCGGGGCTGCTGTGGTTGGGGGTGGTGTGGGTGCTGGTCTGGCCGCCACT
GTGGGCTGCATGGAGAAAGAGGAAGATGAGAGAGTTCAAGGAGGGGACCGAGAGCCCCTACTCCAGGAGG
AATAG

Translation (654 aa):
MPRPVLSVTAFCHRLGKRESKRSFMGNSSNSWVLPREEAQGWMGQAVQGGTRTSRSHASFPKLELGLGHR
PSPTREPPTCSICLERLREPISLDCGHDFCIRCFSTHRIPGCELPCCPECRKICKQRKGLRSLGERMKLL
PQRPLPPALQETCAVRAERLLLVRINASGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHSGKSFLLD
HLLSGLPSLESGDSGRPRAEGSLPGIRWGANGLTRGIWMWSHPFLLGKEGKKVAVFLVDTGDVMSPELSK
ETRVKLCALTMMLSSYQILNTSQELKDTDLGYLEMFVHVAEVMGKHYGMVPIQHLDLLVRDSSHHNKSGQ
GHVGDILQKLSGKYPKVQELLLGKRARCYLLPAPERQWVNKDQASPRGNTEDDFSHHFRAYILDVLSTAP
QHAKSRCQGYWSEGRAVARGDRRLLTGQQLAQEIKNLSGWMGKTGPSFNSPDEMAAQLHDLRKVEAAKKE
FEEYVRQQDIATKRIFSALRVLPDTMRNLLSTQKDAILARHGVALLCKEREQTLEALEAELQAEAKAFMD
SYTMRFCGHLAAVGGAVGAGLMGLAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGVGAGLAAT
VGCMEKEEDERVQGGDREPLLQEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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