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Report for CCDS2497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2497.1 Public Homo sapiens 2 EFHD1 24 110 108 CCDS HistoryNCBI Gene:80303Re-query CCDS DB by CCDS ID:2497.1Re-query CCDS DB by GeneID:80303See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2497.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264059.8 ENSP00000264059.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264059.8Link to Ensembl Protein Viewer:ENSP00000264059.3Re-query CCDS DB by Nucleotide ID:ENST00000264059Re-query CCDS DB by Protein ID:ENSP00000264059
Original member Current member NCBI NM_025202.4 NP_079478.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025202.4Link to Protein Sequence:NP_079478.1Re-query CCDS DB by Nucleotide ID:NM_025202Re-query CCDS DB by Protein ID:NP_079478Link to BLAST:NP_079478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079478.1 239 Q9BUP0-1 239 100% 0 0

Chromosomal Locations for CCDS 2497.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 232633705 232634006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232662802 232662949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232672309 232672443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232681585 232681719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCCAGTGAGGAGCTGGCGTGCAAGCTGGAGCGCCGGCTGCGGCGCGAGGAGGCCGAGGAGAGTGGCC
CCCAGCTGGCTCCCCTCGGCGCCCCAGCCCCGGAGCCCAAGCCCGAGCCCGAGCCTCCCGCCCGTGCGCC
CACGGCCAGCGCCGACGCGGAGCTGAGCGCCCAGCTGAGCCGGCGGCTGGACATCAACGAGGGCGCTGCG
CGGCCCCGGCGCTGCAGGGTCTTCAACCCCTACACGGAGTTCCCGGAGTTCAGCCGCCGCCTCATCAAGG
ACCTGGAGAGCATGTTCAAACTGTATGACGCTGGGCGGGATGGCTTCATCGACCTGATGGAGCTGAAGCT
GATGATGGAGAAGCTGGGGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCAAGGAGGTGGATGAG
GACTTCGATGGCAAGCTCAGCTTCCGGGAGTTCCTGCTCATTTTCCACAAGGCCGCGGCAGGGGAGCTGC
AGGAGGACAGTGGGCTGATGGCGCTGGCAAAGCTTTCTGAGATCGATGTGGCCCTGGAGGGTGTCAAAGG
TGCCAAGAACTTCTTTGAAGCCAAGGTCCAAGCCTTGTCATCGGCCAGTAAGTTTGAAGCAGAGTTGAAA
GCTGAGCAAGATGAGCGGAAGCGGGAGGAGGAGGAGAGGCGGCTCCGCCAGGCAGCCTTCCAGAAACTCA
AGGCCAACTTCAATACATAG

Translation (239 aa):
MASEELACKLERRLRREEAEESGPQLAPLGAPAPEPKPEPEPPARAPTASADAELSAQLSRRLDINEGAA
RPRRCRVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDE
DFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNFFEAKVQALSSASKFEAELK
AEQDERKREEEERRLRQAAFQKLKANFNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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