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Report for CCDS25074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25074.1 Public Mus musculus 11 Slc6a4 23 108 98 CCDS HistoryNCBI Gene:15567Re-query CCDS DB by CCDS ID:25074.1Re-query CCDS DB by GeneID:15567See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021195.10 ENSMUSP00000021195.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021195.10Link to Ensembl Protein Viewer:ENSMUSP00000021195.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021195Re-query CCDS DB by Protein ID:ENSMUSP00000021195
Original member Current member EBI ENSMUST00000108402.8 ENSMUSP00000104039.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108402.8Link to Ensembl Protein Viewer:ENSMUSP00000104039.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108402Re-query CCDS DB by Protein ID:ENSMUSP00000104039
Original member Current member NCBI NM_010484.2 NP_034614.2 Accepted alive Link to Nucleotide Sequence:NM_010484.2Link to Protein Sequence:NP_034614.2Re-query CCDS DB by Nucleotide ID:NM_010484Re-query CCDS DB by Protein ID:NP_034614Link to BLAST:NP_034614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034614.2 630 Q60857 630 100% 0 0

Chromosomal Locations for CCDS 25074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77010441 77010783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77012921 77013055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77013199 77013418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77015073 77015211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77016629 77016763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77016984 77017087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77018240 77018367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77019125 77019237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77019842 77019973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77021391 77021490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77023175 77023275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77027084 77027251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77031603 77031677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGAGACCACACCTTTGAATTCTCAGAAAGTGCTGTCAGAGTGTAAGGACAAAGAGGACTGCCAAGAAA
ATGGTGTTCTGCAGAAGGGTGTCCCCACACCAGCAGACAAGGCAGGGCCTGGACAAATATCCAATGGGTA
CTCCGCAGTTCCCAGTACAAGCGCTGGGGATGAAGCGCCACACTCTACGCCAGCTGCCACCACCACCCTG
GTGGCTGAGATTCACCAAGGGGAACGGGAGACCTGGGGCAAGAAGATGGATTTCCTCCTGTCTGTCATTG
GCTATGCCGTGGACCTGGGCAACATCTGGCGTTTTCCCTACATATGCTACCAGAATGGTGGAGGGGCCTT
CCTCCTCCCTTACACCATCATGGCCATCTTTGGGGGGATCCCACTCTTCTACATGGAGCTCGCCCTGGGC
CAGTACCACCGAAATGGGTGCATTTCTATATGGAAGAAGATCTGCCCGATTTTCAAAGGCATTGGCTATG
CCATCTGCATCATTGCCTTTTATATCGCCTCCTACTATAACACCATCATAGCCTGGGCGCTCTACTACCT
CATCTCCTCCTTCACGGACCAGCTGCCCTGGACCAGCTGCAAGAACTCTTGGAACACTGGCAACTGCACC
AACTACTTCGCCCAGGACAACATCACCTGGACACTCCATTCCACGTCACCTGCTGAGGAGTTTTACTTGC
GCCATGTCCTGCAGATCCATCAGTCAAAGGGACTCCAGGACCTGGGGACCATCAGCTGGCAGCTGGCTCT
CTGCATCATGCTCATCTTCACCATTATCTACTTCAGCATCTGGAAAGGAGTCAAAACGTCTGGCAAGGTG
GTGTGGGTGACAGCCACCTTCCCTTACATTGTCCTTTCTGTCCTGCTGGTGAGGGGAGCCACCCTTCCTG
GAGCCTGGAGAGGGGTTGTCTTTTACTTGAAACCCAACTGGCAGAAACTCTTGGAGACAGGGGTGTGGGT
TGATGCTGCGGCTCAGATCTTTTTCTCTCTTGGCCCGGGGTTTGGGGTTCTCCTGGCGTTTGCTAGCTAC
AACAAGTTCAACAACAACTGTTACCAAGATGCCCTGGTGACCAGTGTGGTGAACTGCATGACGAGCTTCG
TCTCTGGCTTTGTCATCTTCACGGTGCTTGGCTACATGGCTGAGATGAGGAACGAAGACGTGTCCGAGGT
GGCCAAAGACGCGGGCCCCAGCCTCCTTTTCATCACATATGCGGAGGCAATAGCTAACATGCCAGCATCC
ACATTCTTTGCCATCATCTTCTTCCTCATGTTAATCACGCTGGGTTTGGATAGTACGTTCGCAGGCCTGG
AAGGTGTGATCACAGCTGTGTTGGATGAGTTTCCTCACATCTGGGCCAAGCGCAGGGAATGGTTTGTGCT
CATCGTGGTCATCACTTGCATCTTGGGATCCCTGCTCACACTGACATCAGGAGGGGCGTATGTGGTGACC
CTGCTGGAGGAGTACGCCACGGGGCCAGCAGTGCTCACCGTGGCTCTCATCGAGGCCGTCGTCGTGTCTT
GGTTCTATGGAATCACTCAGTTCTGCAGCGACGTGAAGGAAATGCTGGGCTTCAGCCCCGGATGGTTTTG
GAGGATCTGCTGGGTGGCCATCAGCCCTCTGTTTCTCCTGTTCATCATTTGCAGTTTTTTGATGAGTCCA
CCCCAACTCCGGCTTTTCCAATACAATTATCCCCACTGGAGTATCATCTTGGGCTACTGCATAGGAACAT
CGTCTGTCATCTGCATCCCTATATACATCATTTATCGGCTGATCAGCACTCCAGGGACACTTAAGGAGCG
CATTATTAAAAGTATCACTCCTGAAACACCAACGGAAATTCCGTGTGGGGACATCCGCATGAATGCTGTG
TAA

Translation (630 aa):
METTPLNSQKVLSECKDKEDCQENGVLQKGVPTPADKAGPGQISNGYSAVPSTSAGDEAPHSTPAATTTL
VAEIHQGERETWGKKMDFLLSVIGYAVDLGNIWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALG
QYHRNGCISIWKKICPIFKGIGYAICIIAFYIASYYNTIIAWALYYLISSFTDQLPWTSCKNSWNTGNCT
NYFAQDNITWTLHSTSPAEEFYLRHVLQIHQSKGLQDLGTISWQLALCIMLIFTIIYFSIWKGVKTSGKV
VWVTATFPYIVLSVLLVRGATLPGAWRGVVFYLKPNWQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASY
NKFNNNCYQDALVTSVVNCMTSFVSGFVIFTVLGYMAEMRNEDVSEVAKDAGPSLLFITYAEAIANMPAS
TFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWAKRREWFVLIVVITCILGSLLTLTSGGAYVVT
LLEEYATGPAVLTVALIEAVVVSWFYGITQFCSDVKEMLGFSPGWFWRICWVAISPLFLLFIICSFLMSP
PQLRLFQYNYPHWSIILGYCIGTSSVICIPIYIIYRLISTPGTLKERIIKSITPETPTEIPCGDIRMNAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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