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Report for CCDS25217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25217.1 Public Mus musculus 11 Mpo 23 108 98 CCDS HistoryNCBI Gene:17523Re-query CCDS DB by CCDS ID:25217.1Re-query CCDS DB by GeneID:17523See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020779.10 ENSMUSP00000020779.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020779.10Link to Ensembl Protein Viewer:ENSMUSP00000020779.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020779Re-query CCDS DB by Protein ID:ENSMUSP00000020779
Original member Current member EBI ENSMUST00000121303.7 ENSMUSP00000112837.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121303.7Link to Ensembl Protein Viewer:ENSMUSP00000112837.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121303Re-query CCDS DB by Protein ID:ENSMUSP00000112837
Original member Current member NCBI NM_010824.2 NP_034954.2 Accepted alive Link to Nucleotide Sequence:NM_010824.2Link to Protein Sequence:NP_034954.2Re-query CCDS DB by Nucleotide ID:NM_010824Re-query CCDS DB by Protein ID:NP_034954Link to BLAST:NP_034954.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034954.2 718 P11247 718 100% 0 0

Chromosomal Locations for CCDS 25217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87794539 87794614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87794774 87794867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87795196 87795371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87795798 87795921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87796017 87796146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87796230 87796436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87797324 87797642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87799864 87800024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87801030 87801285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87801581 87801751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87802512 87802749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87803398 87803602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGAAGCTACTCTTGGCCTTGGCAGGCCTCCTGGCCCCTCTGGCCATGCTTCAGACCTCCAATGGTGCCA
CCCCAGCTCTCCTGGGGGAAGTGGAGAATTCAGTTGTGCTGAGCTGTATGGAAGAGGCCAAGCAGCTAGT
GGACAGAGCCTACAAGGAGCGGAGAGAAAGCATCAAGCGGAGCCTCCAAAGCGGCTCTGCCAGCCCCACG
GAGCTCCTGTTTTACTTCAAGCAGCCGGTGGCGGGCACCAGAACAGCTGTGAGGGCCGCTGATTATCTAC
ATGTGGCCCTAGACCTGCTGAAGAGGAAGCTGCAGCCCCTGTGGCCAAGGCCTTTCAATGTTACAGATGT
GTTGACACCTGCTCAGCTGAATCTGTTGTCCGTGTCAAGTGGCTGTGCCTATCAGGACGTGAGGGTGACA
TGCCCACCGAATGACAAGTATCGCACCATCACTGGACACTGCAACAACAGACGAAGCCCCACTCTGGGGG
CCTCCAACCGTGCCTTTGTACGCTGGTTGCCTGCAGAGTATGAAGATGGCGTCTCCATGCCCTTTGGCTG
GACGCCTGGAGTCAATCGCAATGGCTTCAAGGTGCCCCTGGCTCGCCAGGTCTCCAATGCCATCGTGCGC
TTCCCCAACGATCAGCTGACCAAGGACCAGGAGCGTGCACTCATGTTCATGCAGTGGGGACAGTTTCTGG
ATCATGATATCACCTTGACTCCAGAGCCAGCTACCCGGTTCTCCTTCTTCACTGGCCTCAACTGCGAGAC
CAGCTGCCTGCAGCAGCCACCCTGCTTCCCCCTCAAGATCCCACCCAATGACCCTCGAATCAAGAACCAA
AAGGACTGCATCCCCTTCTTCCGCTCCTGCCCGGCATGCACCAGGAACAACATCACCATTCGCAACCAGA
TCAACGCGCTCACTTCCTTCGTGGACGCCAGCGGGGTGTACGGCAGCGAGGACCCCCTAGCCAGAAAGCT
GCGCAACCTCACCAACCAGCTGGGGCTGCTGGCTATCAATACACGCTTCCAAGACAATGGCAGGGCCCTG
ATGCCCTTTGACAGCCTGCACGATGACCCCTGCCTCCTCACCAACCGCTCCGCCCGCATTCCTTGTTTTC
TGGCAGGGGACATGCGCTCCAGCGAGATGCCGGAGCTCACCTCCATGCACACCCTCTTTGTTCGAGAGCA
TAACCGGCTGGCCACACAGCTCAAGCGCCTGAATCCTCGATGGAATGGGGAGAAGCTCTACCAGGAGGCC
CGGAAGATTGTAGGGGCCATGGTCCAGATCATCACATACCGGGACTACCTGCCCTTGGTGTTGGGGCCAG
CAGCCATGAAGAAGTACCTACCCCAGTACCGATCTTACAACGACTCAGTAGACCCTCGAATCGCCAATGT
CTTCACCAACGCTTTCCGTTATGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGAACAATCAGTAC
CGGCCCACAGGGCCCAACCCCCGAGTCCCACTCAGCAAGGTCTTTTTTGCCAGCTGGAGAGTCGTGTTGG
AAGGTGGCATTGACCCCATCCTCCGAGGCCTCATGGCCACTCCAGCCAAACTGAATCGCCAGAATCAAAT
TGTGGTGGATGAGATCCGGGAGCGACTATTTGAGCAAGTCATGAGGATAGGACTGGATTTGCCTGCTCTT
AACATGCAGCGCAGCCGGGATCACGGCCTCCCAGGATACAATGCCTGGAGACGCTTTTGTGGGCTTCCAC
AGCCCAGCACAGTGGGTGAGCTCGGCACGGTGCTGAAGAACCTGGAGTTGGCACGGAAGCTGATGGCACA
ATATGGCACGCCCAACAACATTGACATCTGGATGGGCGGTGTGTCCGAGCCCCTGGAGCCCAATGGCCGT
GTAGGCCAGCTCCTTGCCTGCCTCATTGGCACTCAGTTTAGGAAGCTACGTGATGGTGATCGGTTTTGGT
GGGAGAACCCAGGCGTGTTCAGTAAACAGCAGAGACAGGCCTTGGCCAGCATCTCCTTGCCCCGTATCAT
CTGTGACAACACTGGCATCACCACCGTGTCGAAGAACAACATCTTCATGTCCAACACATACCCCCGAGAC
TTTGTCAGCTGTAACACCCTTCCTAAACTGAACCTGACTTCCTGGAAGGAGACCTAG

Translation (718 aa):
MKLLLALAGLLAPLAMLQTSNGATPALLGEVENSVVLSCMEEAKQLVDRAYKERRESIKRSLQSGSASPT
ELLFYFKQPVAGTRTAVRAADYLHVALDLLKRKLQPLWPRPFNVTDVLTPAQLNLLSVSSGCAYQDVRVT
CPPNDKYRTITGHCNNRRSPTLGASNRAFVRWLPAEYEDGVSMPFGWTPGVNRNGFKVPLARQVSNAIVR
FPNDQLTKDQERALMFMQWGQFLDHDITLTPEPATRFSFFTGLNCETSCLQQPPCFPLKIPPNDPRIKNQ
KDCIPFFRSCPACTRNNITIRNQINALTSFVDASGVYGSEDPLARKLRNLTNQLGLLAINTRFQDNGRAL
MPFDSLHDDPCLLTNRSARIPCFLAGDMRSSEMPELTSMHTLFVREHNRLATQLKRLNPRWNGEKLYQEA
RKIVGAMVQIITYRDYLPLVLGPAAMKKYLPQYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLNNQY
RPTGPNPRVPLSKVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIVVDEIRERLFEQVMRIGLDLPAL
NMQRSRDHGLPGYNAWRRFCGLPQPSTVGELGTVLKNLELARKLMAQYGTPNNIDIWMGGVSEPLEPNGR
VGQLLACLIGTQFRKLRDGDRFWWENPGVFSKQQRQALASISLPRIICDNTGITTVSKNNIFMSNTYPRD
FVSCNTLPKLNLTSWKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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