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Report for CCDS25275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25275.1 Public Mus musculus 11 Kat7 23 108 98 CCDS HistoryNCBI Gene:217127Re-query CCDS DB by CCDS ID:25275.1Re-query CCDS DB by GeneID:217127See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103159.9 ENSMUSP00000099448.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103159.9Link to Ensembl Protein Viewer:ENSMUSP00000099448.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103159Re-query CCDS DB by Protein ID:ENSMUSP00000099448
Original member NCBI NM_177619.3 NP_808287.1 Updated not alive Link to Nucleotide Sequence:NM_177619.3Link to Protein Sequence:NP_808287.1Re-query CCDS DB by Nucleotide ID:NM_177619Re-query CCDS DB by Protein ID:NP_808287
Current member NCBI NM_177619.4 NP_808287.1 Accepted alive Link to Nucleotide Sequence:NM_177619.4Link to Protein Sequence:NP_808287.1Re-query CCDS DB by Nucleotide ID:NM_177619Re-query CCDS DB by Protein ID:NP_808287Link to BLAST:NP_808287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808287.1 522 Q5SVQ0-5 522 100% 0 0

Chromosomal Locations for CCDS 25275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95275786 95275887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95276443 95276549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95277469 95277615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95280391 95280484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95281501 95281641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95281839 95281928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95284029 95284220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95286330 95286440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95289772 95289870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95294563 95294645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95299979 95300218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95306049 95306196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95310035 95310049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGCCGCGAAGGAAGAGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGATTCCGATTTTTCTACAGATC
TCGAGCATACAGACAGTTCAGAGAGTGATGGCACCTCGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGC
CAGGCTAAGCCAGAGTTCCCAAGAAACTAAAAATACAGCTGATCATGATGAGTCACCACCTCGAACTCCA
ACCGGAAATGCACCTTCTTCTGAGTCTGACATAGACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCA
TTGCCAAGGACATGTCCCTGAAGGACTCAGGCAGTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTCA
CGAAAGCTACAATTTCAACATGAAGTGTCCTACGCCGGGCTGCAACTCTCTAGGACATCTTACAGGAAAG
CACGAGAGACATTTCTCCATCTCAGGATGCCCGCTGTATCATAACCTCTCAGCTGACGAATGCAAGGCAC
CAACAGAGAGACAGCTGCGGTATAAGGAAAAGGTGGCTGAACTCAGGAAGAAAAGAAATTCTGGACTGAG
CAAAGAGCAGAAGGAGAAATACATGGAACACAGACAGACCTATGGGAACACTCGGGAGCCTCTCTTGGAA
AACCTGACAAGTGAATATGACTTAGATCTTTTCCGAAGAGCACAAGCCCGGGCTTCTGAGGATTTGGAGA
AGTTAAGGCTTCAAGGCCAAATCACAGAGGGAAGCAACATGATTAAAACAATTGCTTTTGGCCGCTATGA
ACTGGACACTTGGTACCACTCTCCCTATCCTGAGGAATATGCGAGGCTGGGACGTCTCTACATGTGTGAA
TTCTGCTTAAAGTACATGAAGAGCCAGACAATCCTCCGCCGACACATGGCCAAGTGTGTGTGGAAACACC
CCCCTGGTGATGAGATTTATCGCAAAGGCTCCATCTCTGTGTTTGAAGTAGACGGCAAGAAGAACAAGAT
CTACTGCCAAAACCTCTGCCTTTTGGCAAAGCTTTTTCTGGACCATAAGACGCTATACTATGATGTAGAA
CCTTTCCTGTTCTACGTTATGACAGAAGCGGACAATACTGGCTGTCATCTGATTGGATATTTTTCTAAGG
AGAAGAATTCATTTCTCAACTATAATGTCTCGTGCATCCTCACCATGCCTCAGTACATGCGACAGGGCTA
CGGGAAGATGCTGATCGATTTCAGTTATTTACTTTCCAAAGTAGAAGAGAAAGTCGGCTCTCCAGAGCGC
CCACTGTCAGACCTGGGGCTCATAAGCTACCGCAGCTACTGGAAGGAGGTACTGCTCCGATACCTGCACA
ACTTCCAGGGCAAGGAGATCTCCATCAAAGAAATTAGCCAGGAAACAGCTGTGAATCCCGTGGACATTGT
CAGCACTCTGCAAGCCCTTCAGATGCTCAAGTATTGGAAAGGCAAGCACCTAGTTTTAAAGAGACAGGAC
CTGATAGATGAGTGGATAGCCAAAGAGGCCAAAAGGTCCAACTCCAACAAAACCATGGATCCAAGCTGCT
TAAAATGGACCCCTCCCAAGGGCACTTAA

Translation (522 aa):
MPRRKRNAGSSSDGTEDSDFSTDLEHTDSSESDGTSRRSARVTRSSARLSQSSQETKNTADHDESPPRTP
TGNAPSSESDIDISSPNVSHDESIAKDMSLKDSGSDLSHRPKRRRFHESYNFNMKCPTPGCNSLGHLTGK
HERHFSISGCPLYHNLSADECKAPTERQLRYKEKVAELRKKRNSGLSKEQKEKYMEHRQTYGNTREPLLE
NLTSEYDLDLFRRAQARASEDLEKLRLQGQITEGSNMIKTIAFGRYELDTWYHSPYPEEYARLGRLYMCE
FCLKYMKSQTILRRHMAKCVWKHPPGDEIYRKGSISVFEVDGKKNKIYCQNLCLLAKLFLDHKTLYYDVE
PFLFYVMTEADNTGCHLIGYFSKEKNSFLNYNVSCILTMPQYMRQGYGKMLIDFSYLLSKVEEKVGSPER
PLSDLGLISYRSYWKEVLLRYLHNFQGKEISIKEISQETAVNPVDIVSTLQALQMLKYWKGKHLVLKRQD
LIDEWIAKEAKRSNSNKTMDPSCLKWTPPKGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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