NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25283.1 Public Mus musculus 11 Abi3 23 108 98 CCDS HistoryNCBI Gene:66610Re-query CCDS DB by CCDS ID:25283.1Re-query CCDS DB by GeneID:66610See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059026.9 ENSMUSP00000061893.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059026.9Link to Ensembl Protein Viewer:ENSMUSP00000061893.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059026Re-query CCDS DB by Protein ID:ENSMUSP00000061893
Original member Current member NCBI NM_025659.4 NP_079935.1 Accepted alive Link to Nucleotide Sequence:NM_025659.4Link to Protein Sequence:NP_079935.1Re-query CCDS DB by Nucleotide ID:NM_025659Re-query CCDS DB by Protein ID:NP_079935Link to BLAST:NP_079935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079935.1 367 Q8BYZ1-1 367 100% 0 0

Chromosomal Locations for CCDS 25283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95832713 95832876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95833209 95833334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95833640 95833800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95834003 95834098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95834306 95834391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95835778 95835954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95837070 95837237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95842021 95842146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCGGAGCTGCAGCAGTTACAGCAGCTGCAGGAGTTTGATATCCCCACGGGCCGGGAGGCTCTGCGGG
GCAACCACAGCGCCCTGCTACGGGTGGCCAACTACTGCGAGGATAACTACTTGCAGGCCACAGACAAGCG
GAAGGCGCTGGAAGAGACGATGGCTTTCACCACCCAGGCCCTAGCCAGTGTGGCCTACCAAGTGGGTAAC
CTGGCCGGGCATACTCTTCGAATGCTGGATCTACAGGGTGCTGCCCTGCGGCAGGTAGAAGCCAAGATGA
GCACACTGGGCCAGATGGTAAACATGCATATGGAGAAGGTAGCTAGAAGGGAGATCGGCACTTTGGCCAC
TGTTGTGCGGCTGCCCTCTAACCAGAAAGTCATCCCTCCTGAGAGCCTGCCTTCCCTCACTCCCTACCAC
AGAAAACCCCTCAACTTTGCCTGCTTGGATGACATTGGCCACGGAGTCAAGGACTTGAGCACGCAGCTGT
CACGGACCGGGACCCTGTCTCGCAAGAGCATAAAGGCGCCTGCTACACCTGTTTCCGCCACGCTGGGGAG
ACCACCCCGGATCCCTGAGCCGGTGCAGCTCCCAGCCGTGCCAGACGGCAAGCTCTCCGCTGCCTCCTCT
GCCTCTTCCTTGGCCTCGGCAGGCAGTGCGGAAGGTGCCAGTGGGATCCCCCAGTCCAAGGGACAGGTAG
CGCCTGCAACCCCGCCTCCTCCACCTGTAGCACCTGTAACCCCGCCTCCTCCACCGTTGTCTGCCGAGGT
CTTCTTGCCGCCCCCTCCGCTGGAGGTGTCCCAGCCCCCTCTGGAAGCAGAGTTGCCCCTGCCTCCTCCC
CCAGCTCTAGAGGGGGATGAACTGGGGCTGCTGCCTCCGCCCCCACCAGGTTTTGGACCAGATGAGCCCA
GCTGGGTCCCTGCTAGCTACTTGGAGAAAGTGGTGACCCTGTACCCATACACCCGGCAAAAGGACAATGA
GCTCTCCTTCTCTGAAGGCACCGTCATCTGTGTCACTCGCCGCTACTCGGATGGCTGGTGTGAGGGTGTC
AGTTCAGAGGGCACTGGATTCTTCCCAGGGAACTATGTGGAGCCCAGCTGCTGA

Translation (367 aa):
MAELQQLQQLQEFDIPTGREALRGNHSALLRVANYCEDNYLQATDKRKALEETMAFTTQALASVAYQVGN
LAGHTLRMLDLQGAALRQVEAKMSTLGQMVNMHMEKVARREIGTLATVVRLPSNQKVIPPESLPSLTPYH
RKPLNFACLDDIGHGVKDLSTQLSRTGTLSRKSIKAPATPVSATLGRPPRIPEPVQLPAVPDGKLSAASS
ASSLASAGSAEGASGIPQSKGQVAPATPPPPPVAPVTPPPPPLSAEVFLPPPPLEVSQPPLEAELPLPPP
PALEGDELGLLPPPPPGFGPDEPSWVPASYLEKVVTLYPYTRQKDNELSFSEGTVICVTRRYSDGWCEGV
SSEGTGFFPGNYVEPSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH