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Report for CCDS25343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25343.1 Public Mus musculus 11 Neurod2 23 108 98 CCDS HistoryNCBI Gene:18013Re-query CCDS DB by CCDS ID:25343.1Re-query CCDS DB by GeneID:18013See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041685.6 ENSMUSP00000041373.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041685.6Link to Ensembl Protein Viewer:ENSMUSP00000041373.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041685Re-query CCDS DB by Protein ID:ENSMUSP00000041373
Original member Current member NCBI NM_010895.3 NP_035025.3 Accepted alive Link to Nucleotide Sequence:NM_010895.3Link to Protein Sequence:NP_035025.3Re-query CCDS DB by Nucleotide ID:NM_010895Re-query CCDS DB by Protein ID:NP_035025Link to BLAST:NP_035025.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035025.3 383 Q62414 383 100% 0 0

Chromosomal Locations for CCDS 25343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98327185 98328336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGCTGACCCGCCTGTTCAGCGAGCCCGGCCTCCTCTCGGACGTGCCCAAGTTCGCCAGCTGGGGCGACG
GCGACGACGACGAGCCGAGGAGCGACAAGGGCGACGCGCCGCCGCAGCCTCCTCCTGCTCCCGGGTCGGG
GGCTCCAGGACCCGCCCGGGCCGCCAAGCCAGTGTCTCTTCGTGGAGGAGAAGAGATCCCTGAACCCACG
TTGGCTGAGGTCAAGGAGGAAGGAGAGCTGGGCGGCGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGGAC
TGGACGAGGCGGAAGGCGAGCGGCCCAAGAAGCGCGGGCCGAAGAAACGCAAGATGACCAAGGCGCGTCT
GGAGCGCTCCAAGCTGCGGCGACAGAAGGCCAACGCGCGGGAGCGCAACCGCATGCACGACCTGAACGCG
GCTCTGGACAACCTGCGCAAGGTGGTGCCCTGCTACTCCAAGACGCAGAAGCTGTCCAAGATCGAGACCC
TGCGCCTGGCCAAGAACTACATCTGGGCTCTCTCGGAGATCTTGCGCTCCGGGAAGCGGCCGGATCTGGT
GTCCTACGTGCAGACTCTGTGCAAGGGGCTGTCACAGCCCACCACGAATCTGGTGGCCGGCTGCCTGCAG
CTAAACTCTCGTAACTTCCTCACGGAGCAGGGCGCGGACGGCGCCGGCCGCTTTCACGGCTCGGGTGGCC
CGTTCGCCATGCATCCGTACCCATACCCGTGCTCCCGCCTGGCAGGCGCACAGTGTCAGGCGGCTGGCGG
CCTGGGCGGAGGCGCGGCGCACGCCCTGCGGACCCACGGCTACTGCGCCGCCTACGAGACGCTGTACGCG
GCGGCCGGTGGCGGCGGCGCTAGCCCGGACTACAACAGCTCCGAGTACGAGGGTCCACTCAGTCCCCCGC
TCTGTCTCAACGGCAACTTCTCGCTCAAGCAGGACTCGTCCCCCGATCACGAGAAGAGCTACCACTACTC
TATGCACTACTCGGCGCTGCCCGGCTCACGGCCCACGGGCCACGGGCTGGTCTTCGGCTCGTCGGCCGTG
CGCGGGGGCGTCCACTCCGAGAATCTCTTGTCTTACGATATGCACCTTCACCACGATCGGGGCCCCATGT
ACGAGGAGCTCAACGCATTTTTCCATAACTGA

Translation (383 aa):
MLTRLFSEPGLLSDVPKFASWGDGDDDEPRSDKGDAPPQPPPAPGSGAPGPARAAKPVSLRGGEEIPEPT
LAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNA
ALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQ
LNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAGGLGGGAAHALRTHGYCAAYETLYA
AAGGGGASPDYNSSEYEGPLSPPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAV
RGGVHSENLLSYDMHLHHDRGPMYEELNAFFHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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