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Report for CCDS25723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25723.1 Public Mus musculus 11 Baiap2 23 108 98 CCDS HistoryNCBI Gene:108100Re-query CCDS DB by CCDS ID:25723.1Re-query CCDS DB by GeneID:108100See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103021.9 ENSMUSP00000099310.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103021.9Link to Ensembl Protein Viewer:ENSMUSP00000099310.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103021Re-query CCDS DB by Protein ID:ENSMUSP00000099310
Original member Current member NCBI NM_001037754.3 NP_001032843.1 Accepted alive Link to Nucleotide Sequence:NM_001037754.3Link to Protein Sequence:NP_001032843.1Re-query CCDS DB by Nucleotide ID:NM_001037754Re-query CCDS DB by Protein ID:NP_001032843Link to BLAST:NP_001032843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032843.1 482 Q8BKX1-4 482 100% 0 0

Chromosomal Locations for CCDS 25723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119943195 119943248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119957102 119957177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119960157 119960243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119980789 119980850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119981393 119981464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119981989 119982126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119993696 119993848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119996523 119996747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119997009 119997090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119997489 119997690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119998634 119998702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119999135 119999297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120000552 120000586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120001074 120001104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGTCGCTTTCACGCTCGGAGGAGATGCACCGGCTCACGGAAAATGTCTACAAGACCATCATGGAGCAGT
TCAACCCCAGCCTCCGCAACTTCATCGCCATGGGCAAGAACTATGAGAAAGCACTGGCAGGTGTCACCTT
CGCTGCCAAAGGCTATTTCGATGCTCTGGTAAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCTAAG
GAACTTGGGGACGTCCTCTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAACCAGTTGGAAGAGACGC
TGAAGTCTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGACTCCAGGTATCTAAG
TGCTGCACTGAAGAAATACCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGACAAGTGTCAGGCTGAG
CTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAGT
ACATCGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAACTACGTGTCTGACGGCTACAAGACAGCACT
CACTGAGGAGCGCAGGAGGTTCTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCT
TACCATTCCAAGGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCA
ACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAG
TGCCCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTG
CCACCTGAGCTGGCACCATTTGTGGGGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCG
TGCGCAAGAGCGTGACGCCGAAGAACAGCTATGCCACCACTGAGAACAAGACACTGCCACGTTCAAGCTC
CATGGCAGCTGGCCTAGAACGTAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGAC
AATAGCACTCTGCTGAGCTTCAAGGAGGGCGACCTCATCACGCTGCTAGTGCCTGAGGCCCGTGACGGCT
GGCACTATGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGTTCCCCTTCTCCTACACCCGGGTCCTGGA
CAGTGACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTA
GACAAGGATGACCTGGCCCTCCCCCCTCCTGACTACGGCACGTCCTCCCGGGCATTCCCCACCCAGACAG
CCGGCACATTCAAGCAGAGACCCTACAGCGTGGCCGTTCCTGCCTTCTCTCAGGGTCTGGATGACTACGG
GGCACGGTCTGTGAGCAGTGGCAGTGGCACGCTGGTGTCCACAGTGTGA

Translation (482 aa):
MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSK
ELGDVLFQMAEVHRQIQNQLEETLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAE
LKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAA
YHSKGKELLAQKLPLWQQACADPNKIPDRAVQLMQQMANSNGSILPSALSASKSNLVISDPIPGAKPLPV
PPELAPFVGSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGD
NSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLL
DKDDLALPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSSGSGTLVSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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