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Report for CCDS25816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25816.1 Public Mus musculus 12 Vsnl1 23 108 98 CCDS HistoryNCBI Gene:26950Re-query CCDS DB by CCDS ID:25816.1Re-query CCDS DB by GeneID:26950See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072299.6 ENSMUSP00000072145.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072299.6Link to Ensembl Protein Viewer:ENSMUSP00000072145.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072299Re-query CCDS DB by Protein ID:ENSMUSP00000072145
Original member Current member EBI ENSMUST00000220506.1 ENSMUSP00000152711.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220506.1Link to Ensembl Protein Viewer:ENSMUSP00000152711.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220506Re-query CCDS DB by Protein ID:ENSMUSP00000152711
Original member NCBI NM_012038.4 NP_036168.1 Updated not alive Link to Nucleotide Sequence:NM_012038.4Link to Protein Sequence:NP_036168.1Re-query CCDS DB by Nucleotide ID:NM_012038Re-query CCDS DB by Protein ID:NP_036168
Current member NCBI NM_012038.5 NP_036168.1 Accepted alive Link to Nucleotide Sequence:NM_012038.5Link to Protein Sequence:NP_036168.1Re-query CCDS DB by Nucleotide ID:NM_012038Re-query CCDS DB by Protein ID:NP_036168Link to BLAST:NP_036168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036168.1 191 P62761 191 100% 0 0

Chromosomal Locations for CCDS 25816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11326307 11326504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11332001 11332216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11386815 11386976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAACAGAATAGCAAACTGGCCCCAGAAGTCATGGAGGACCTGGTGAAGAGCACTGAGTTCAATG
AG
CATGAGCTTAAGCAGTGGTACAAGGGCTTCCTCAAGGACTGTCCGAGCGGGAGGCTGAACCTCGAGGA
G
TTCCAGCAGCTCTATGTGAAGTTCTTCCCCTATGGAGATGCCTCCAAGTTCGCGCAGCACGCCTTCCGC
ACC
TTCGACAAGAACGGTGATGGCACCATCGATTTCCGAGAGTTCATCTGTGCCCTGTCCATCACCTCCA
GA
GGTAGCTTTGAGCAGAAACTGAACTGGGCTTTCAACATGTATGATCTGGACGGTGACGGCAAGATCAC
C
CGAGTGGAGATGCTGGAGATTATCGAGGCTATCTACAAAATGGTGGGCACCGTGATCATGATGAAAATG
AAT
GAGGATGGCCTGACGCCTGAACAGCGGGTGGACAAGATTTTCAGCAAGATGGATAAGAACAAAGATG
AC
CAGATTACACTGGATGAATTCAAAGAAGCTGCAAAAAGCGACCCTTCCATTGTATTACTTCTGCAGTG
T
GACATTCAGAAATGA


Translation (191 aa):
MGKQNSKLAPEVMEDLVKSTEFNEHELKQWYKGFLKDCPSGRLNLEEFQQLYVKFFPYGDASKFAQHAFR
T
FDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIE
AIYKMVGTVIMMKM
N
EDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPSIVLLLQCDIQK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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