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Report for CCDS25949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25949.1 Public Mus musculus 12 Klhdc1 23 108 98 CCDS HistoryNCBI Gene:271005Re-query CCDS DB by CCDS ID:25949.1Re-query CCDS DB by GeneID:271005See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063445.12 ENSMUSP00000068046.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063445.12Link to Ensembl Protein Viewer:ENSMUSP00000068046.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063445Re-query CCDS DB by Protein ID:ENSMUSP00000068046
Original member NCBI NM_178253.5 NP_839984.1 Updated not alive Link to Nucleotide Sequence:NM_178253.5Link to Protein Sequence:NP_839984.1Re-query CCDS DB by Nucleotide ID:NM_178253Re-query CCDS DB by Protein ID:NP_839984
Current member NCBI NM_178253.6 NP_839984.1 Accepted alive Link to Nucleotide Sequence:NM_178253.6Link to Protein Sequence:NP_839984.1Re-query CCDS DB by Nucleotide ID:NM_178253Re-query CCDS DB by Protein ID:NP_839984Link to BLAST:NP_839984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839984.1 406 Q80YG3 406 100% 0 0

Chromosomal Locations for CCDS 25949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69241918 69242013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69250753 69250823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69251371 69251488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69251928 69252046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69253692 69253770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69256175 69256258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69258023 69258106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69258569 69258627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69259501 69259613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69263149 69263221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69268242 69268326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69269826 69269878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69283133 69283319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGGACCCGCAGGCGTTCTGCGTGGCCGAGGAGCGCAGCGGCCACTGCGCAGTGGTGGACGGACACT
TCCTCTACGTGTGGGGGGGCTACGTGTCTATTGAAGACAATGAGGTATATTTGCCAAATGATGAAATGTG
GACCTACGATATTGATAGTGGGCTGTGGAAAATGCACCTAATGGAAGGGGAGCTCCCCCCCTCCATGTCG
GGAAGCTGCGGGGCTTGCATCCACGGAAGGCTCTATGTCTTTGGAGGCTATGACGACAAAGGATACAGCA
ACCGGCTTTACTTTGTCAATTTACGAACAAGAGATGGAACTTACACCTGGGAAAAAATCACCAAGTTTGA
TGGACAACCACCCACACCACGTGATAAACTTTCCTGCTGGGTATATAAAGACAGATTAATATATTTCGGT
GGTTATGGGTACAGGAGGCACAGTGAGCTTCAAGAATGTTTTGATGTTCATGATGCATCATGGGAAGAAC
AGATATTCTGGGGGTGGCACAATGACGTCCATGTGTTTGACACAAAGACGAGGACGTGGTCTCAACCAGA
AATTAAAGGTGGAGTTCCACCACAGCCACGAGCCGCGCACTCATGTGCAGTTCTGGGAAATAAGGGTTAC
GTCTTTGGCGGACGTGTTTTGCAAACCAGGATGAATGACCTACACTATCTAAACCTAGACACCTGGGTCT
GGTCTGGAAGGATTTCTGTTAATGGAGAAAGCCCCAAACACCGGTCATGGCACACTTTAACAGCAATAAC
TGATGATAAGCTTTTCCTATTTGGTGGACTAAATGCAGATAATATTCCACTAAGTGATGGCTGGATTCAT
AATATAACAACAAACTGTTGGAAACAACTTAGACATTTACCGTACACCAGGCCCAGGTTATGGCACACAG
CCTGTCTGGGAAAAGAAAATGAAATAATGGTATTTGGTGGGAGCAAAGACAACTTACTTTTCTTGGATAC
AGGTCACTGTAATGATTTATTGATCTTTCAAACACAGCCCTATTCACTGCTCAGGTCATGTCTTGACTGC
ATTGGGAAAAATGCTATCATTTTAAAAAGTCAAATATCTTTATTACCTCCTAAACTTCTGCAGCAAGTCC
TCAAAAAAATAACATTTTGGACTGCAGCTAATTACCGAAAGGAGCAAAGAATCCGAAAGGAAGAGACAGA
AAATAATCAGCCGAGAGTCAGTAGCTGCTGA

Translation (406 aa):
MADPQAFCVAEERSGHCAVVDGHFLYVWGGYVSIEDNEVYLPNDEMWTYDIDSGLWKMHLMEGELPPSMS
GSCGACIHGRLYVFGGYDDKGYSNRLYFVNLRTRDGTYTWEKITKFDGQPPTPRDKLSCWVYKDRLIYFG
GYGYRRHSELQECFDVHDASWEEQIFWGWHNDVHVFDTKTRTWSQPEIKGGVPPQPRAAHSCAVLGNKGY
VFGGRVLQTRMNDLHYLNLDTWVWSGRISVNGESPKHRSWHTLTAITDDKLFLFGGLNADNIPLSDGWIH
NITTNCWKQLRHLPYTRPRLWHTACLGKENEIMVFGGSKDNLLFLDTGHCNDLLIFQTQPYSLLRSCLDC
IGKNAIILKSQISLLPPKLLQQVLKKITFWTAANYRKEQRIRKEETENNQPRVSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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