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Report for CCDS25950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25950.1 Public Mus musculus 12 Klhdc2 23 108 98 CCDS HistoryNCBI Gene:69554Re-query CCDS DB by CCDS ID:25950.1Re-query CCDS DB by GeneID:69554See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021362.4 ENSMUSP00000021362.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021362.4Link to Ensembl Protein Viewer:ENSMUSP00000021362.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021362Re-query CCDS DB by Protein ID:ENSMUSP00000021362
Original member Current member NCBI NM_027117.3 NP_081393.2 Accepted alive Link to Nucleotide Sequence:NM_027117.3Link to Protein Sequence:NP_081393.2Re-query CCDS DB by Nucleotide ID:NM_027117Re-query CCDS DB by Protein ID:NP_081393Link to BLAST:NP_081393.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081393.2 406 Q4G5Y1 406 100% 0 0

Chromosomal Locations for CCDS 25950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69296995 69297147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69300216 69300295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69302324 69302441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69303534 69303649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69303881 69303962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69304544 69304627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69305628 69305708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69305783 69305841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69307190 69307299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69307618 69307690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69308958 69309045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69309987 69310039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69310153 69310276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCTGATGGCAACGAGGATGCTCGAGCGGAGGATCTGCCGGGCCCGGCCTTCGAGAACTACGAGGCCA
TGGAGCTGGCCTGCCCGGCTGAACGCAGCGGCCACGTCGCTGTCAGCGATGGGCGCCACATGTTCGTCTG
GGGCGGCTACAAGAGTAATCAAGTGAGAGGATTATATGACTTTTATCTGCCCAGAGAAGAACTGTGGATC
TACAACATGGAGACTGGAAGATGGAAGAAAATCAACACTGAAGGTGACGTTCCCCCGTCTATGTCTGGGA
GCTGCGCTGTGTGCGTGGACCGGGTGCTGTACTTGTTTGGTGGGCACCATTCCAGAGGCAATACAAACAA
GTTCTACATGCTGGATTCGAGGTCTGCAGACAGAGGGTTACAGTGGGAAAGGATCGACTGCCAAGGAATC
CCTCCATCATCAAAGGACAAACTTGGCGTCTGGGTGTATAAAAACAAGTTAATATTTTTTGGAGGCTATG
GATATTTACCTGAAGATAAAGTATTGGGAACTTTTGAATTTGATGAAACATCTTTTTGGAATTCAAGTCA
TCCAAGAGGATGGAATGATCATGTCCATATTTTAGACACTGAAACATTTGCCTGGAGCCAGCCCATCACC
ACTGGTAAGGCACCTTCACCTCGGGCTGCCCATGCCTGTGCAACTGTTGGAAACAAGGGCTTTGTGTTTG
GTGGCAGATACCGGGATGCTAGAATGAATGATCTTCACTATCTTAATCTGGATACGTGGGAGTGGAATGA
ACTAATTCCACAAGGTGTGTGCCCTGTTGGCAGATCCTGGCACTCACTGACACCAGTCTCTTCAGACCAT
CTTTTTCTCTTTGGAGGATTTACCACTGAAAAACAGCCACTAAGTGATGCCTGGACTTACTGCATCAGTA
AAAATGAATGGATTCAGTTTAATCATCCTTATGTTGAAAAACCAAGATTATGGCACACAGCTTGTGCGAG
TGATGAAGGAGAAGTCATTGTTTTTGGTGGTTGTGCTAACAATCTGCTGGTTCATCACAGAGCTGCACAC
AGTAATGAAGTACTTATATTTTCAGTTCAACCAAAATCTCTTGTACGGCTAAGCTTAGAAGCAGTCATCT
GCTTTAAAGAGATGCTAGCCAACTCGTGGAGCTGCCTTCCAAAACACTTACTTCACAGCGTTAATCAGAG
GTTTGGTAGTAACAACACTTCTGGATCATAA

Translation (406 aa):
MADGNEDARAEDLPGPAFENYEAMELACPAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWI
YNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHHSRGNTNKFYMLDSRSADRGLQWERIDCQGI
PPSSKDKLGVWVYKNKLIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHVHILDTETFAWSQPIT
TGKAPSPRAAHACATVGNKGFVFGGRYRDARMNDLHYLNLDTWEWNELIPQGVCPVGRSWHSLTPVSSDH
LFLFGGFTTEKQPLSDAWTYCISKNEWIQFNHPYVEKPRLWHTACASDEGEVIVFGGCANNLLVHHRAAH
SNEVLIFSVQPKSLVRLSLEAVICFKEMLANSWSCLPKHLLHSVNQRFGSNNTSGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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