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Report for CCDS26000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26000.1 Public Mus musculus 12 Gphn 23 108 98 CCDS HistoryNCBI Gene:268566Re-query CCDS DB by CCDS ID:26000.1Re-query CCDS DB by GeneID:268566See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052472.5 ENSMUSP00000054064.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052472.5Link to Ensembl Protein Viewer:ENSMUSP00000054064.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052472Re-query CCDS DB by Protein ID:ENSMUSP00000054064
Original member Current member NCBI NM_172952.3 NP_766540.2 Accepted alive Link to Nucleotide Sequence:NM_172952.3Link to Protein Sequence:NP_766540.2Re-query CCDS DB by Nucleotide ID:NM_172952Re-query CCDS DB by Protein ID:NP_766540Link to BLAST:NP_766540.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766540.2 769 Q8BUV3 769 100% 0 0

Chromosomal Locations for CCDS 26000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 78226778 78226841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78343352 78343430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78376360 78376417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78412341 78412433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78454757 78454851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78481299 78481365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78492038 78492310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78504617 78504751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78522898 78522954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78532657 78532698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78562856 78562898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78590534 78590671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78609145 78609237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78612972 78613027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78623304 78623423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78626134 78626192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78627107 78627260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78637458 78637579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78654807 78654894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78664491 78664564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78669824 78669888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78680291 78680394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78682718 78682814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78683778 78683911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGGCGACCGAGGGAATGATCCTCACCAACCACGACCATCAAATCCGTGTCGGAGTCCTCACAGTGAGTG
ATAGCTGCTTCAGGAATCTTGCAGAAGACCGCAGTGGGATAAATCTAAAAGATCTTGTCCAAGATCCTTC
TTTGTTGGGTGGGACTATATCGGCATACAAGATAGTACCAGATGAAATAGAAGAAATCAAGGAAACACTC
ATAGACTGGTGTGATGAAAAGGAACTTAATTTAATATTAACAACTGGAGGAACGGGGTTTGCACCACGAG
ATGTCACTCCAGAGGCCACAAAAGAAGTAATAGAGCGGGAAGCGCCAGGGATGGCCCTGGCAATGCTGAT
GGGATCGCTCAATGTCACACCTCTGGGCATGCTCTCTAGACCAGTGTGTGGAATAAGGGGGAAAACTCTG
ATAATTAACCTACCTGGTAGCAAGAAAGGATCTCAGGAATGCTTTCAGTTCATACTGCCAGCTCTACCTC
ATGCCATTGACCTTTTACGTGATGCCATTGTAAAAGTAAAGGAGGTGCATGATGAACTTGAAGATTTACC
TTCCCCACCACCTCCTCTCTCTCCACCTCCTACAACTAGCCCACATAAACAGACAGAAGACAAAGGAGTT
CAGTGTGAAGAAGAGGAAGAAGAAAAGAAAGACAGTGGTGTAGCTTCAACAGAAGATAGTTCCTCATCAC
ATATAACTGCAGCAGCTCTTGCTGCAAAGATTCCAGACTCCATCATTTCTCGTGGTGTTCAGGTGCTCCC
ACGAGACACAGCCTCCCTTAGCACTACTCCTTCAGAATCGCCCCGTGCTCAGGCTACATCTCGCCTCTCT
ACAGCTTCTTGTCCAACACCAAAACAAATTAGACGGCCGGATGAAAGCAAAGGAGTTGCTAGTAGAGTTG
GATCCCTCAAAGCTCGGCTTCCGTCGTGCTCATCTACCTATAGTGTATCTGAGGTCCAGTCCAGGTGCAG
CAGCAAGGAGAACATTCTAAGAGCCAGTCACAGTGCTGTAGATATCACCAAGGTGGCTAGAAGACATCGC
ATGTCTCCTTTTCCCCTGACGTCTATGGACAAAGCCTTCATTACAGTCCTGGAGATGACTCCGGTGCTTG
GTACAGAAATCATCAATTACCGAGATGGAATGGGGCGAGTCCTTGCTCAAGATGTATATGCAAAAGACAA
CCTACCCCCATTCCCTGCATCAGTAAAAGATGGCTATGCTGTTCGAGCTGCTGATGGTCCAGGGGATCGT
TTCATCATTGGGGAATCCCAAGCTGGTGAGCAGCCAACTCAGACAGTAATGCCAGGACAAGTGATGCGGG
TTACAACAGGTGCTCCAATCCCCTGCGGTGCTGATGCAGTAGTGCAAGTTGAAGATACTGAACTCATCAG
GGAATCAGATGATGGTACTGAAGAACTTGAAGTACGAATTCTGGTGCAAGCTCGGCCAGGCCAAGATATC
CGACCCATCGGCCATGACATTAAGAGAGGGGAGTGTGTTTTGGCCAAAGGAACCCATATGGGCCCTTCAG
AGATTGGTCTCCTTGCAACTGTGGGTGTCACAGAAGTGGAAGTTAATAAGTTTCCAGTGGTTGCCGTTAT
GTCAACAGGGAATGAGCTGCTAAATCCTGAAGATGATCTCTTACCAGGAAAGATTCGGGACAGCAATCGA
TCAACACTTCTAGCAACAATTCAGGAACATGGTTACCCAACAATCAACCTGGGAATTGTAGGAGACAACC
CAGATGACTTACTCAATGCCTTGAATGAGGGTATCAGCCGTGCTGATGTCATCATCACGTCAGGAGGTGT
GTCCATGGGGGAAAAGGACTATCTCAAGCAGGTGCTGGACATTGATCTTCATGCTCAGATCCATTTTGGC
AGAGTTTTTATGAAGCCAGGCTTGCCAACAACATTTGCAACTTTGGATATTGATGGTGTAAGAAAAATTA
TTTTTGCACTACCAGGGAATCCTGTATCAGCTGTGGTCACCTGCAACCTCTTTGTTGTACCTGCACTGAG
AAAGATGCAGGGTATCTTGGATCCTCGGCCAACCATCATCAAAGCCAGGTTATCGTGTGATGTAAAACTG
GACCCTCGCCCAGAATACCACCGGTGTATACTGACTTGGCATCACCAAGAACCACTGCCCTGGGCCCAGA
GTACAGGTAATCAGATGAGCAGCCGTCTGATGAGCATGCGCAGTGCCAATGGATTATTGATGCTACCTCC
AAAGACAGAGCAGTACGTGGAACTTCACAAAGGCGAGGTGGTAGATGTCATGGTCATTGGACGGCTATGA

Translation (769 aa):
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETL
IDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTL
IINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGV
QCEEEEEEKKDSGVASTEDSSSSHITAAALAAKIPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLS
TASCPTPKQIRRPDESKGVASRVGSLKARLPSCSSTYSVSEVQSRCSSKENILRASHSAVDITKVARRHR
MSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR
FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDI
RPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNR
STLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFG
RVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKL
DPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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