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Report for CCDS26046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26046.1 Public Mus musculus 12 Aldh6a1 23 108 98 CCDS HistoryNCBI Gene:104776Re-query CCDS DB by CCDS ID:26046.1Re-query CCDS DB by GeneID:104776See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085192.6 ENSMUSP00000082288.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085192.6Link to Ensembl Protein Viewer:ENSMUSP00000082288.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085192Re-query CCDS DB by Protein ID:ENSMUSP00000082288
Original member Current member NCBI NM_134042.3 NP_598803.1 Accepted alive Link to Nucleotide Sequence:NM_134042.3Link to Protein Sequence:NP_598803.1Re-query CCDS DB by Nucleotide ID:NM_134042Re-query CCDS DB by Protein ID:NP_598803Link to BLAST:NP_598803.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598803.1 535 Q9EQ20 535 100% 0 0

Chromosomal Locations for CCDS 26046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84432444 84432548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84433432 84433530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84433856 84434035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84436328 84436509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84436729 84436918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84437975 84438096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84439413 84439715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84440235 84440313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84441763 84441924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84442071 84442145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84443729 84443788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84450889 84450939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCGGCGGCAGTGGCGGCAGCGGCAGCAATGCGGTCCCGGATCCTGCAGGTTTCTTCTAAGGTAAATG
CCACATGGTATCCAGCATCCTCCTTCTCTTCCTCATCAGTGCCAACTGTAAAGCTCTTCATTGATGGAAA
ATTTGTTGAATCAAAAAGTGATAAATGGATTGACATCCACAACCCAGCCACCAATGAAGTTGTTGGTAGG
GTTCCTCAGTCCACCAAAGCTGAGATGGACGCAGCCGTTGAGTCCTGCAAACGTGCTTTCCCTGCGTGGG
CAGACACATCTATTTTAAGCCGGCAGCAGGTCCTGCTTCGTTATCAGCAGCTCATTAAAGAAAACCTGAA
AGAAATTGCCAGGTTAATCACACTGGAACAAGGGAAGACTCTTGCTGATGCTGAAGGAGATGTATTCCGA
GGCCTTCAGGTGGTTGAGCATGCCTGTAGTGTGACATCCCTCATGCTGGGAGAGACCATGCCATCTATCA
CCAAAGACATGGACCTTTATTCCTACCGTCTGCCTCTGGGGGTGTGTGCAGGCATTGCACCATTTAATTT
TCCTGCCATGATCCCCCTTTGGATGTTTCCCATGGCTATGGTTTGTGGAAATACTTTCCTAATGAAACCA
TCAGAGCGAGTACCTGGAGCAACTATGCTCCTTGCTAAGTTGCTTCAGGATTCTGGGGCCCCTGACGGAA
CACTGAACATTATCCATGGACAACATGATGCTGTAAACTTTATTTGCGATCATCCAGACATCAAGGCAAT
CAGCTTTGTGGGATCCAACCAGGCAGGAGAGTACATCTTCGAAAGAGGATCAAGAAATGGCAAGAGGGTT
CAAGCCAATATGGGAGCCAAAAACCATGGAGTAGTCATGCCAGACGCCAATAAGGAAAATACCCTCAACC
AGCTGGTCGGGGCAGCATTCGGAGCTGCTGGGCAGCGCTGCATGGCTCTTTCAACAGCCATCCTCGTAGG
GGAGGCTAAGAAGTGGCTGCCAGAACTGGTCGATCGGGCCAAAAATCTGCGAGTCAATGCAGGAGACCAG
CCTGGAGCTGATCTTGGCCCCCTGATCACCCCCCAGGCCAAAGAGAGAGTCTGCAATCTGATCGATAGCG
GAACAAAAGAGGGAGCTTCCATCCTTCTGGATGGGCGAAGAATTAAAGTCAAGGGCTATGAAAATGGTAA
CTTTGTTGGACCAACCATCATCTCAAATGTTAAGCCAAGTATGACTTGTTACAAAGAGGAGATATTTGGT
CCAGTTCTTGTGGTTTTGGAGACAGAAACACTGGATGAAGCAATCAAGATTGTAAATGACAACCCATATG
GAAATGGAACTGCCATCTTCACCACCAATGGAGCCACCGCCCGGAAATATGCTCACATGGTGGATGTGGG
ACAGGTGGGTGTGAATGTCCCCATTCCAGTGCCTTTGCCGATGTTTTCCTTCACCGGCTCTCGCTCTTCC
TTCAGGGGAGACACCAATTTCTATGGCAAACAGGGCATCCAGTTTTACACGCAGTTAAAGACTATCACGT
CTCAGTGGAAAGAAGAAGATGCTACGCTTTCCTCCCCTGCTGTAGTCATGCCTACCATGGGGCGTTAG

Translation (535 aa):
MAAAVAAAAAMRSRILQVSSKVNATWYPASSFSSSSVPTVKLFIDGKFVESKSDKWIDIHNPATNEVVGR
VPQSTKAEMDAAVESCKRAFPAWADTSILSRQQVLLRYQQLIKENLKEIARLITLEQGKTLADAEGDVFR
GLQVVEHACSVTSLMLGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKP
SERVPGATMLLAKLLQDSGAPDGTLNIIHGQHDAVNFICDHPDIKAISFVGSNQAGEYIFERGSRNGKRV
QANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAILVGEAKKWLPELVDRAKNLRVNAGDQ
PGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRRIKVKGYENGNFVGPTIISNVKPSMTCYKEEIFG
PVLVVLETETLDEAIKIVNDNPYGNGTAIFTTNGATARKYAHMVDVGQVGVNVPIPVPLPMFSFTGSRSS
FRGDTNFYGKQGIQFYTQLKTITSQWKEEDATLSSPAVVMPTMGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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