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Report for CCDS26099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26099.1 Public Mus musculus 12 Zc3h14 23 108 98 CCDS HistoryNCBI Gene:75553Re-query CCDS DB by CCDS ID:26099.1Re-query CCDS DB by GeneID:75553See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110104.9 ENSMUSP00000105731.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110104.9Link to Ensembl Protein Viewer:ENSMUSP00000105731.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110104Re-query CCDS DB by Protein ID:ENSMUSP00000105731
Original member Current member NCBI NM_001008506.2 NP_001008506.2 Accepted alive Link to Nucleotide Sequence:NM_001008506.2Link to Protein Sequence:NP_001008506.2Re-query CCDS DB by Nucleotide ID:NM_001008506Re-query CCDS DB by Protein ID:NP_001008506Link to BLAST:NP_001008506.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008506.2 604 Q8BJ05-3 604 100% 0 0

Chromosomal Locations for CCDS 26099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98747123 98747158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98747480 98747522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98752778 98752892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98756185 98756225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98757009 98757204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98758512 98758941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98759719 98759879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98760310 98760410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98763823 98763978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98774245 98774319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98783582 98783702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98784916 98785052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98785318 98785406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98785635 98785741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98786575 98786581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGAAATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAG
CTTACGTAGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAAT
GACAGAGGACCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTCCATGGTGTATTA
GATAAACTGCGCTCTGTCACGACTGAGCCCTCTAGTCTAAAGTCTCCTGACGCCAGCATCTTCGATAGTC
ACGTGCCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCCTCCCCT
TGCTGTTTCTAGTTCTAGACCTGAAAAGAGGGATTCCAGAGTTTCTACAAGTTCACAGGAGCAGAAATCC
ACTAATGTCAGACATTCATATGATGATGGAGCTTCCACCCGGCTAATGTCAACAGTGAAACCTCTGAGGG
AACCAGCACCCTCTGAAGATGTGATTGATATCAAGCCAGAACCAGATGATCTCATTGATGAAGACCTCAA
TTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACATACGGTTCTTCTCGCCCT
TCTATTGAAATTTATCGACCACCTGCAAGTAGAAATGCAGACACTGGTACTCACTTAAACAGGCTGCAAC
TTCATCCGCAGCAAAGCAGTGCTCACGCTGCCAAGCAGCTGGATGTACAAAGCAGCCAGGTATCCGAAGC
AGGACGGTTGTGTGAGCCACCAGTGCTTAGCAGCGTAGAAGACACTTATAGCCCCTTCTTCAGAAACAAC
TTGGATAAAATGAGTATTGAGGACGAAAACTTTCGAAAGAGAAAATTGCCTGTGGTAAGTTCGGTTGTTA
AAGTAAAAAGATTTAGCCATGATGGAGAAGAGGAGGAAGAAGATGAGGATTATGGGACCCGCATAGGAAG
CTTGTCCAGCAGCGTGTCAGTACCAGCAAAGCCTGAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT
AACAAGAATCTAATTTTGAAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAGACAACTAACTATTCTG
CAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGA
AATGGTCCAGGGGCAAAACAGGGCCCCCAGAATAAGTCCCCCTGTTAAAGAAGAGGAAGCAAAAGGAGAT
AATACAGGAAAAAGTCAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAAATTGATCCAGTAATGG
TAGAAACAATGGAGATGAGTCAAGCCGAGATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAACTTCT
GGAGCGCTGCAAGTACTGGCCTGCCTGTAAAAATGGGGATGAGTGTGTATACCATCATCCCATTTCACCT
TGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGTTTGTGCATCCAAATTGTAAATATGACA
CAAAGTGTACTAAAGCAGATTGTCCCTTCACTCACATGAGTAGAAGAGCCTCGATACTGACTCCAAAACC
AGTGTCGTCACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAAATGGAA
TGTCCCTTCTACCACCCAAAACACTGTAGGTTTAACACTCAGTGTACGAGACCTGACTGCACATTTTATC
ACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGTGAGTGA

Translation (604 aa):
MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVL
DKLRSVTTEPSSLKSPDASIFDSHVPSNKSSFSRGDERRHEAAVPPLAVSSSRPEKRDSRVSTSSQEQKS
TNVRHSYDDGASTRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRP
SIEIYRPPASRNADTGTHLNRLQLHPQQSSAHAAKQLDVQSSQVSEAGRLCEPPVLSSVEDTYSPFFRNN
LDKMSIEDENFRKRKLPVVSSVVKVKRFSHDGEEEEEDEDYGTRIGSLSSSVSVPAKPERRPSLPPSKQA
NKNLILKAISEAQESVTKTTNYSAVPQKQTLPVAPRTRTSQEELLAEMVQGQNRAPRISPPVKEEEAKGD
NTGKSQGTQQRQLLSRLQIDPVMVETMEMSQAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHPISP
CKAFPNCKFAEKCLFVHPNCKYDTKCTKADCPFTHMSRRASILTPKPVSSPAPSSNGQLCRYFPACKKME
CPFYHPKHCRFNTQCTRPDCTFYHPTITVPPRHALKWIRPQSSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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