NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26117.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26117.2 Public Mus musculus 12 Slc24a4 23 108 98 CCDS HistoryNCBI Gene:238384Re-query CCDS DB by CCDS ID:26117.2Re-query CCDS DB by GeneID:238384See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26117.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079020.11 ENSMUSP00000078030.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079020.11Link to Ensembl Protein Viewer:ENSMUSP00000078030.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079020Re-query CCDS DB by Protein ID:ENSMUSP00000078030
Original member NCBI NM_172152.3 NP_742164.2 Updated not alive Link to Nucleotide Sequence:NM_172152.3Link to Protein Sequence:NP_742164.2Re-query CCDS DB by Nucleotide ID:NM_172152Re-query CCDS DB by Protein ID:NP_742164
Current member NCBI NM_172152.4 NP_742164.2 Accepted alive Link to Nucleotide Sequence:NM_172152.4Link to Protein Sequence:NP_742164.2Re-query CCDS DB by Nucleotide ID:NM_172152Re-query CCDS DB by Protein ID:NP_742164Link to BLAST:NP_742164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742164.2 622 Q8CGQ8-1 622 100% 0 0

Chromosomal Locations for CCDS 26117.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102129390 102129519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102131511 102131621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102213862 102213938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102218951 102219025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102222043 102222127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102222735 102222838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102223607 102223681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102227064 102227089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102228896 102228949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102230351 102230493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102234682 102234851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102239043 102239247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102254510 102254676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102260378 102260492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102264338 102264450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102264877 102264942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102266345 102266497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGCTCTCCGTGGACTCATCCGGCAGAGCAAAGTTCGCCGGAGGCGAGAGATGCTGCCGCAGCAAGTTG
GCTTCGTGTGCGCTGTGCTGGCCCTGGTGTGCTGTGCCTCCGGCCTCTTTGGAAGCTTGGGCCACAAAAC
AGCTTCTGCTGGCAAACATGTTCTGCTGGACACGTGGCGAAATAGAAAATTGATGGCACCAATCAATGGG
ACTCCGCTGGCTAAGAACTGCACAGATCCTGCGATTCACGAGTTCCCCACAGACCTGTTCTCCAACAAAG
AACGACAGCACGGCGCTGTCCTGCTACACATCCTTGGTGCTCTCTATATGTTCTATGCCCTGGCCATCGT
GTGCGATGACTTCTTTGTTCCATCCCTAGAGAAGATCTGTGAGAAACTTCATCTGAGTGAAGATGTGGCA
GGTGCCACCTTCATGGCTGCAGGAAGCTCGACACCAGAGCTGTTTGCTTCTGTCATTGGTGTGTTCATCA
CCCACGGAGATGTCGGTGTAGGAACGATTGTGGGCTCTGCTGTGTTCAACATCCTATGTATCATTGGAGT
GTGTGGACTCTTTGCTGGACAGGTGGTGCGGTTGACGTGGTGGGCTGTGTGCCGTGACTCTGTGTACTAC
ACGCTCTCTGTCATTGTGCTCATTGCGTTCATATACGATGAGGAAATTGTGTGGTGGGAAGGCCTGGTGC
TCATCATCCTGTACGTGTTTTATATTCTTATCATGAAGTACAATATGAAGATGCAGACATTTTTCACAAC
CAAACAAAAGAGCATTGCAAATGGTAACCCGGTCAGCAACGAGCTGGAAGATGGTAATGACCTCTATGAT
GGTAGCTATGACGACCCTTCTGTGCCATTGCTGGGGCAAGTGAAGGAGAAACCTCCCTATGGCAAAACCC
CCGTGGTTATGGTGGATGAGATTCTCAGCTCTAGCCCTCCCAAGTTCACCTTCCCTGAGGCTGGCCTGCG
CATCATGATCACCAACAAGTTTGGGCCCAGGACTCGACTACGGATGGCCAGCAGGATCATAATTAATGAA
CGACAGAGGTTGATCAACTCAGCCAATGGTGTTAACAGCAAGCCACTGCAAAACGGGAGACATGAGAACA
TGGAGAATGGAAATGTTCCTGTGGAGAACCCTGAAGACCCACAGCAAGGCCAGGAGCAGCAGCCGCCACC
ACAGCCACCACCCCCAGAGCCAGAGTCAGTAGAGACAGTCTTCCTGTCACCCTTCTCAATGCCTGAGGCA
AAAGGCGACAAGGCTAAGTGGGTGTTCACGTGGCCCCTCATCTTCCTCCTGTGTGTCACCATCCCCAACT
GCAGCAAGCCCCGCTGGGAGAAGTTCTTCATGGTCACCTTCATCACGGCCACTCTGTGGATTGCCGTGTT
CTCCTACCTCATGGTGTGGCTGGTGACTATTATTGGATACACACTTGGGATCCCCGATGTCATCATGGGC
ATCACCTTCCTGGCGGCAGGCACAAGTGTTCCAGACTGCATGGCAAGCTTAATTGTGGCAAGACAAGGTC
TTGGAGACATGGCAGTCTCTAACACCATCGGAAGCAACGTGTTTGATATCCTGGTGGGGCTTGGCATCCC
GTGGGGCCTGCAGACCATGGTTATTAATTATGGATCCACAGTGAAGATCAACAGCCGGGGTCTGGTCTAT
TCCGTGGTGCTGCTGCTGGGCTCTGTCGCTCTCACTGTCCTTGGTATTCACCTCAACAAATGGCGCCTGG
ACCGGAAACTGGGCATCTACGTGCTGGTCCTCTATGCTGTCTTCCTGTGCTTCTCCATAATGATAGAGTT
TAATGTCTTTACCTTCGTCAACTTGCCCATGTGCAGAGAAGACGACTAA

Translation (622 aa):
MALRGLIRQSKVRRRREMLPQQVGFVCAVLALVCCASGLFGSLGHKTASAGKHVLLDTWRNRKLMAPING
TPLAKNCTDPAIHEFPTDLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVA
GATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYY
TLSVIVLIAFIYDEEIVWWEGLVLIILYVFYILIMKYNMKMQTFFTTKQKSIANGNPVSNELEDGNDLYD
GSYDDPSVPLLGQVKEKPPYGKTPVVMVDEILSSSPPKFTFPEAGLRIMITNKFGPRTRLRMASRIIINE
RQRLINSANGVNSKPLQNGRHENMENGNVPVENPEDPQQGQEQQPPPQPPPPEPESVETVFLSPFSMPEA
KGDKAKWVFTWPLIFLLCVTIPNCSKPRWEKFFMVTFITATLWIAVFSYLMVWLVTIIGYTLGIPDVIMG
ITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGIPWGLQTMVINYGSTVKINSRGLVY
SVVLLLGSVALTVLGIHLNKWRLDRKLGIYVLVLYAVFLCFSIMIEFNVFTFVNLPMCREDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH