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Report for CCDS26252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26252.1 Public Mus musculus 13 Sugct 23 108 98 CCDS HistoryNCBI Gene:192136Re-query CCDS DB by CCDS ID:26252.1Re-query CCDS DB by GeneID:192136See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068545.5 ENSMUSP00000070759.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068545.5Link to Ensembl Protein Viewer:ENSMUSP00000070759.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068545Re-query CCDS DB by Protein ID:ENSMUSP00000070759
Original member Current member NCBI NM_138654.3 NP_619595.3 Accepted alive Link to Nucleotide Sequence:NM_138654.3Link to Protein Sequence:NP_619595.3Re-query CCDS DB by Nucleotide ID:NM_138654Re-query CCDS DB by Protein ID:NP_619595Link to BLAST:NP_619595.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619595.3 436 Q7TNE1 436 100% 0 0

Chromosomal Locations for CCDS 26252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 16857855 16858018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 16976157 16976220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17252491 17252593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17301918 17302015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17323205 17323276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17452457 17452552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17554326 17554469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17577490 17577581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17644781 17644901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17662219 17662269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17662739 17662824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17671701 17671774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17672551 17672602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17694639 17694732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCTGTGGATGCTGGCCAGGGCGGTGGCTTTTCGGAGACCCGGCCGAGGCCTGGCCGGCGGGAGGGGGC
TGTGGACCGGCCGCCCGCAGTCAGATTGTGACAGTATGAAGCCCCTGGAGGGTGTGAGAATTCTGGATCT
AACAAGAGTACTGGCAGGACCCTTTGCCACGATGAATTTAGGAGATCTTGGAGCAGAAGTTATAAAAGTT
GAAAGACCAGGAGCTGGTGATGACACACGATCTTGGGGACCTCCTTTTGTGAACACTGAAAGTACATATT
TTCTTAGTGTTAATCGAAATAAAAAAAGTATAGCTGTTAATATCAAGGATCCAAGAGGAGTGAGAATCGT
CAAAGAGCTTGCAGCCATTTGTGATGTGTTTGTGGAAAACTATGTTCCTGGGAAACTTTCTGAGATGGGC
CTAGGATATGAAGATATAGATAAGATTGCTCCTCACATCATCTACTGCTCCATCACAGGATATGGCCAGA
CAGGGCCCATGTCTCACAGAGCAGGTTATGATGCTATTGCTTCTGCTATGTCTGGTCTAATGCACATCAC
AGGACCTGAGGATGGAGATCCTGTTCGCCCTGGAGTGGCCATGACTGACCTCGCCACTGGTCTTTTTGCT
TATGGGGCCATTATGGCTGGCCTCCTACAACGTTATAGAACTGGAAAAGGACTGTTCATTGATTGTAATC
TGCTGTCATCACAGGTGGCATGTTTGACCCAAGTAGCTGCTAATTATCTTATTGGACAAAAGGAAGCGAA
ACGCTGGGGCACAGCTCATGGCAGTATTGTTCCTTATCAGGCTTTTAAAACCAAGGATGGCTATCTTGTA
ATTGGAGCAGGAAATAACCAACAGTTTGCTGTGGTATGCAAGATCTTGAATTTGCCTGAACTGATCGATG
ATTGCAAGTATAGAACGAACCATCTTCGGGTACAGAATAGAAAAGAGCTTGTGAAAATCCTTTCAGCACG
GTTTGCAGAAGAAGTGACTGCCAAGTGGCTTTGTCTCTTTGAAGGAAGTGGGATCCCATATGGACCAATC
AACAGCCTGAAGGATGTGTTTTCAGAAGCCCAGGTATTGCACAATGGCCTTGTTATGGAGATGAATCATC
CAACTGTGGGGAAGATTTCAGTCCCAGGTCCAGCTGTGAGATACAGCAAGTTCAAGATGTCAGAGGCAAA
GCCACCTCCCCTGCTGGGACAGCATACAAGGCATATCCTGAAGGAGGTCCTCAGATATGATGAGGGGGCT
ATTGAGAAGCTACTCTGCTCTGGTGTGATAGAGCAACATGAAACCAAGTGA

Translation (436 aa):
MLWMLARAVAFRRPGRGLAGGRGLWTGRPQSDCDSMKPLEGVRILDLTRVLAGPFATMNLGDLGAEVIKV
ERPGAGDDTRSWGPPFVNTESTYFLSVNRNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMG
LGYEDIDKIAPHIIYCSITGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATGLFA
YGAIMAGLLQRYRTGKGLFIDCNLLSSQVACLTQVAANYLIGQKEAKRWGTAHGSIVPYQAFKTKDGYLV
IGAGNNQQFAVVCKILNLPELIDDCKYRTNHLRVQNRKELVKILSARFAEEVTAKWLCLFEGSGIPYGPI
NSLKDVFSEAQVLHNGLVMEMNHPTVGKISVPGPAVRYSKFKMSEAKPPPLLGQHTRHILKEVLRYDEGA
IEKLLCSGVIEQHETK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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