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Report for CCDS26411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26411.1 Public Mus musculus 13 Sox4 23 108 98 CCDS HistoryNCBI Gene:20677Re-query CCDS DB by CCDS ID:26411.1Re-query CCDS DB by GeneID:20677See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067230.5 ENSMUSP00000100013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067230.5Link to Ensembl Protein Viewer:ENSMUSP00000100013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000067230Re-query CCDS DB by Protein ID:ENSMUSP00000100013
Original member Current member NCBI NM_009238.3 NP_033264.2 Accepted alive Link to Nucleotide Sequence:NM_009238.3Link to Protein Sequence:NP_033264.2Re-query CCDS DB by Nucleotide ID:NM_009238Re-query CCDS DB by Protein ID:NP_033264Link to BLAST:NP_033264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033264.2 440 Q06831 440 100% 0 0

Chromosomal Locations for CCDS 26411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 28951699 28953021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGTACAACAGACCAACAACGCGGAGAACACTGAGGCTCTGCTGGCCGGGGAGAGCTCGGACTCGGGCG
CCGGCCTGGAGCTGGGCATCGCGTCCTCCCCGACGCCTGGCTCCACCGCGTCGACGGGCGGCAAGGCGGA
CGACCCCAGCTGGTGCAAGACGCCCAGTGGCCACATCAAGCGGCCCATGAACGCCTTTATGGTGTGGTCG
CAGATCGAGCGGCGCAAGATCATGGAGCAGTCGCCCGACATGCACAACGCCGAGATCTCCAAGCGGCTAG
GCAAACGCTGGAAGCTGCTCAAGGACAGCGACAAGATTCCGTTCATCCAGGAGGCGGAGCGGCTGCGCCT
CAAGCACATGGCTGACTACCCTGACTACAAGTACCGGCCGCGAAAGAAGGTGAAGTCGGGCAACGCGGGC
GCGGGATCGGCGGCCACAGCCAAGCCAGGGGAGAAGGGCGACAAGGTCGCGGGCAGCAGCGGCCACGCGG
GAAGCAGCCACGCGGGGGGTGGCGCGGGCGGCAGCTCCAAGCCCGCGCCCAAGAAGAGCTGTGGCCCCAA
GGTGGCGGGCAGCTCGGTCGGCAAGCCCCACGCTAAGCTGGTCCCGGCGGGCGGCAGCAAGGCGGCTGCA
TCGTTCTCTCCAGAGCAAGCTGCCCTGCTGCCCCTGGGGGAGCCCACGGCCGTCTACAAGGTGCGGACTC
CCAGTGCGGCCACTCCGGCCGCCTCCTCCTCGCCGTCCAGTGCGCTGGCCACCCCAGCCAAACACCCTGC
CGACAAGAAAGTGAAGCGCGTCTACCTGTTTGGAAGCCTGGGCGCTTCGGCGTCTCCCGTCGGGGGCCTG
GGAGCGAGCGCCGACCCCAGTGATCCACTGGGGTTGTACGAAGATGGAGGCCCGGGATGCTCGCCCGATG
GCCGGAGTCTGAGCGGCCGCAGCAGCGCAGCATCATCGCCAGCCGCCAGCCGATCGCCCGCTGACCACCG
CGGCTACGCCAGCCTACGCGCAGCCTCGCCCGCCCCGTCCAGCGCGCCCTCGCACGCGTCCTCCTCGCTC
TCCTCGTCCTCTTCCTCCTCCTCGGGCTCTTCGTCGTCCGACGACGAGTTCGAAGACGACCTGCTCGACC
TGAACCCCAGCTCAAACTTTGAGAGCATGTCCCTGGGCAGTTTCAGCTCCTCATCGGCGCTCGATCGGGA
CCTGGATTTTAACTTCGAACCCGGCTCAGGCTCCCACTTCGAATTCCCGGACTATTGCACGCCCGAGGTG
AGCGAGATGATCTCGGGAGATTGGCTGGAGTCCAGCATCTCTAACCTGGTCTTCACCTACTGA

Translation (440 aa):
MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWS
QIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVKSGNAG
AGSAATAKPGEKGDKVAGSSGHAGSSHAGGGAGGSSKPAPKKSCGPKVAGSSVGKPHAKLVPAGGSKAAA
SFSPEQAALLPLGEPTAVYKVRTPSAATPAASSSPSSALATPAKHPADKKVKRVYLFGSLGASASPVGGL
GASADPSDPLGLYEDGGPGCSPDGRSLSGRSSAASSPAASRSPADHRGYASLRAASPAPSSAPSHASSSL
SSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEV
SEMISGDWLESSISNLVFTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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