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Report for CCDS2650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2650.1 Public Homo sapiens 3 STT3B 24 110 108 CCDS HistoryNCBI Gene:201595Re-query CCDS DB by CCDS ID:2650.1Re-query CCDS DB by GeneID:201595See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2650.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295770.4 ENSP00000295770.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295770.4Link to Ensembl Protein Viewer:ENSP00000295770.2Re-query CCDS DB by Nucleotide ID:ENST00000295770Re-query CCDS DB by Protein ID:ENSP00000295770
Original member Current member NCBI NM_178862.3 NP_849193.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178862.3Link to Protein Sequence:NP_849193.1Re-query CCDS DB by Nucleotide ID:NM_178862Re-query CCDS DB by Protein ID:NP_849193Link to BLAST:NP_849193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849193.1 826 Q8TCJ2 826 100% 0 0

Chromosomal Locations for CCDS 2650.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 31532999 31533312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31576396 31576504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31579809 31580096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31596798 31596863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31600360 31600459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31615105 31615203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31616929 31617075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31617940 31617988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31619676 31619830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31622097 31622308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31623674 31623861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31624914 31625085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31625954 31626127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31629298 31629411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31632935 31633147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31635984 31636064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2481 nt):
ATGGCGGAGCCCTCGGCCCCGGAGAGCAAGCACAAGTCGTCCCTCAACTCGTCCCCGTGGAGTGGCCTCA
TGGCCCTGGGAAACAGCCGGCACGGCCACCACGGGCCCGGGGCCCAGTGCGCGCACAAGGCGGCGGGCGG
CGCGGCGCCGCCGAAGCCGGCCCCGGCGGGGCTGTCCGGGGGGCTGTCGCAGCCGGCTGGGTGGCAGTCG
CTTCTCTCCTTCACCATCCTCTTCCTGGCCTGGCTTGCCGGCTTCAGCTCGCGCCTCTTCGCCGTCATCC
GCTTCGAAAGCATCATCCACGAGTTCGACCCGTGGTTTAACTATAGATCAACACATCATCTTGCATCTCA
TGGGTTCTATGAATTTTTAAATTGGTTTGATGAAAGAGCATGGTATCCACTAGGAAGAATAGTAGGTGGT
ACTGTTTACCCAGGGTTGATGATAACCGCTGGCCTTATTCATTGGATTTTAAATACATTGAACATAACTG
TTCACATAAGAGACGTATGTGTGTTCCTTGCACCAACTTTTAGCGGCCTTACATCTATATCTACTTTCCT
GCTTACAAGAGAACTTTGGAACCAAGGAGCAGGACTTTTAGCTGCTTGTTTTATTGCTATTGTACCAGGC
TACATATCTCGGTCAGTAGCTGGATCCTTTGATAATGAAGGCATTGCTATTTTTGCACTTCAGTTCACAT
ACTATTTATGGGTAAAATCTGTAAAAACTGGGTCAGTTTTTTGGACAATGTGCTGCTGCTTATCCTATTT
CTATATGGTCTCTGCTTGGGGTGGTTATGTATTTATCATCAATCTTATTCCACTGCATGTATTTGTGTTG
TTACTGATGCAGAGATACAGCAAAAGAGTCTACATAGCATATAGCACTTTCTACATTGTGGGTTTAATAT
TATCAATGCAGATACCTTTTGTGGGATTCCAGCCAATCAGAACAAGTGAACACATGGCAGCTGCAGGTGT
CTTTGCATTGCTGCAAGCTTATGCTTTCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTCCAG
ACCCTTTTCTTTTTGGGTGTATCACTAGCTGCAGGTGCTGTGTTCCTTAGTGTCATCTATTTGACTTATA
CAGGTTACATTGCACCATGGAGTGGCAGGTTTTATTCATTGTGGGATACTGGGTATGCAAAAATACACAT
TCCAATTATTGCATCAGTGTCTGAGCATCAACCTACGACTTGGGTGTCTTTCTTCTTTGATCTACATATT
CTTGTATGTACCTTCCCAGCAGGCCTTTGGTTCTGCATCAAAAATATCAACGATGAAAGAGTATTTGTTG
CTCTATATGCAATCAGTGCTGTCTACTTTGCTGGAGTGATGGTGCGACTGATGTTGACTTTGACTCCAGT
CGTGTGTATGCTGTCTGCAATTGCCTTTTCAAATGTTTTTGAGCACTATTTGGGGGATGACATGAAAAGG
GAAAATCCACCTGTGGAGGACAGCAGTGATGAGGATGACAAAAGAAACCAAGGAAATTTGTATGATAAGG
CAGGTAAAGTGAGGAAACATGCAACTGAACAGGAAAAAACTGAAGAGGGATTAGGCCCTAATATAAAAAG
CATTGTCACCATGTTGATGCTGATGCTATTGATGATGTTTGCTGTCCACTGTACCTGGGTCACAAGCAAT
GCCTACTCTAGTCCAAGTGTAGTCCTGGCCTCATACAATCATGATGGCACCAGGAATATCTTAGATGATT
TTAGAGAAGCTTACTTTTGGCTAAGGCAAAATACAGATGAACATGCACGAGTAATGTCTTGGTGGGATTA
TGGCTATCAGATAGCTGGAATGGCTAATAGAACTACGTTGGTGGATAATAACACCTGGAATAACAGCCAC
ATAGCACTGGTGGGAAAAGCTATGTCTTCTAATGAAACAGCAGCCTATAAAATCATGAGGACTCTAGATG
TAGATTATGTTTTGGTTATTTTTGGAGGGGTTATTGGCTATTCTGGTGATGATATCAACAAATTTCTCTG
GATGGTTAGGATAGCTGAAGGAGAACATCCCAAAGACATTCGGGAAAGTGACTATTTTACCCCACAGGGA
GAATTCCGTGTAGACAAAGCAGGATCCCCTACTTTGTTGAATTGCCTTATGTATAAAATGTCATACTACA
GATTTGGAGAAATGCAGCTGGATTTTCGTACACCCCCAGGTTTTGACCGAACACGTAATGCTGAGATTGG
AAATAAGGACATTAAATTCAAACATTTGGAAGAAGCCTTTACATCAGAACACTGGCTTGTTAGGATATAT
AAAGTAAAAGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAGTCACCAACATTTTCCCAAAAC
AGAAGTATTTGTCAAAGAAGACTACCAAAAGGAAGCGTGGCTACATTAAAAATAAGCTGGTTTTTAAGAA
AGGCAAGAAAATATCTAAGAAGACTGTTTAA

Translation (826 aa):
MAEPSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGAQCAHKAAGGAAPPKPAPAGLSGGLSQPAGWQS
LLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDERAWYPLGRIVGG
TVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLTRELWNQGAGLLAACFIAIVPG
YISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVL
LLMQRYSKRVYIAYSTFYIVGLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQ
TLFFLGVSLAAGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHI
LVCTFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGDDMKR
ENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSN
AYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWDYGYQIAGMANRTTLVDNNTWNNSH
IALVGKAMSSNETAAYKIMRTLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIRESDYFTPQG
EFRVDKAGSPTLLNCLMYKMSYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIY
KVKAPDNRETLDHKPRVTNIFPKQKYLSKKTTKRKRGYIKNKLVFKKGKKISKKTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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