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Report for CCDS26548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26548.1 Public Mus musculus 13 Dok3 23 108 98 CCDS HistoryNCBI Gene:27261Re-query CCDS DB by CCDS ID:26548.1Re-query CCDS DB by GeneID:27261See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047877.4 ENSMUSP00000046695.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047877.4Link to Ensembl Protein Viewer:ENSMUSP00000046695.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047877Re-query CCDS DB by Protein ID:ENSMUSP00000046695
Original member Current member EBI ENSMUST00000223563.1 ENSMUSP00000153308.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223563.1Link to Ensembl Protein Viewer:ENSMUSP00000153308.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223563Re-query CCDS DB by Protein ID:ENSMUSP00000153308
Original member Current member NCBI NM_013739.2 NP_038767.1 Accepted alive Link to Nucleotide Sequence:NM_013739.2Link to Protein Sequence:NP_038767.1Re-query CCDS DB by Nucleotide ID:NM_013739Re-query CCDS DB by Protein ID:NP_038767Link to BLAST:NP_038767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038767.1 444 Q9QZK7-1 444 100% 0 0

Chromosomal Locations for CCDS 26548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55523422 55524111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55524219 55524391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55524481 55524580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55527332 55527637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55528449 55528514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGAGTCTGTGGAGCCCCCGGTCAAAGACGGCATCCTCTACCAGCAGCACGTAAAGTTTGGCAAGAAAT
GCTGGCGCAAAGTGTGGGCTCTGCTGTATGCGGGAGGCCCATCAGGGGTAGCTCGGCTAGAAAGCTGGGA
CGTGCGTGATGGTGGCCTGGGACCAGCAGGCGACAGGTCCACAGGGCCCAGCCGTCGAGGGGAACGCCGG
GTCATACGCTTGGCTGACTGTGTATCTGTCCTGCCTGCGGATGGCGAGAGCTGTCCCAGGGACACTGGTG
CCTTCCTGATTACCACCACTGAGCGAAGCCACCTGTTGGCTGCACAGCACCGCCAGTCCTGGGTGGACCC
CATCTGTCAGCTGGCCTTCCCGGGTACCGGAGAATGTTCGTCAGGATCAGGACAGGCTGAGAGTCCAAAA
AGGGGCTTTGTTCCCATGGAGGAAAACTCTATCTACTCCTCCTGGCAGGAAGTGACCGAGTTTCCGGTGA
TCGTGCAGAGGACAGAGGCCACCTCCCGCTGCCAGCTGAAAGGACCCTACCTCCTGGTGCTGGGCCAAGA
TGACATCCAACTGAGGGAGACATCCAAGCCCCAGGCCTGTTTTAGCTGGCCCTACCGTTTCCTGCGCAAG
TACGGCTCTGACAAGGGTGTGTTCTCGTTTGAGGCTGGCCGCCGCTGTGACTCAGGTGAGGGCCTTTTTG
CCTTCAGTAGCCCGCGTGCCCCAGACATATGTGGGGTTGTGGCTGCCGCCATTGCCCGCCAGCGGGAGCG
TCTTCCAGAGCTGGCCATGTCCCCACCCTGCCCCCTGCCTCGGGCCCTCTCCCTGCCCTCCCTAGAGCCC
CCTGGAGAGCTTCGGGAGGTGGCCCCAGGATTTGAGCTGCCCACTCCCAGAAAGCTGCCTCTAACTGATC
CCGGGCCTCAAAGCCTACCACTGCTGCTCAGCCCCACACAAGAAGGACCGGCATCCGGTCTCTATGCGTC
CGTGTGCAAGCAGACCAGCAAGCACACAGGCACGGCGGAGCATCTCTATGAGAACGTGTGCATGCTGGAG
GCCAGCCCTGGGCTGACCAATGGGGGTCCTGAAGCCCAAGAGGGCCCCCCTGGTGGCCGCAGCCCCCTGG
GCAGCCCTATCTACCATAACACTGAGGATCTGAGTTGGCCGGGCTCGGCCCAGGACAGCAATCTGGAAGC
CCAGTACCGGAGGCTGCTGGAACTGGAGCTGGATGAGGCCGGAAGCGCCGGCCGCTCTGGAGCGCAGGCA
GGCATCAAGGCCAAGCTGGTGACCCTGCTGACCCGTGAACGGAAGAAGGGCCCCGCCCCCTGTGACCGGC
CCTGA

Translation (444 aa):
MESVEPPVKDGILYQQHVKFGKKCWRKVWALLYAGGPSGVARLESWDVRDGGLGPAGDRSTGPSRRGERR
VIRLADCVSVLPADGESCPRDTGAFLITTTERSHLLAAQHRQSWVDPICQLAFPGTGECSSGSGQAESPK
RGFVPMEENSIYSSWQEVTEFPVIVQRTEATSRCQLKGPYLLVLGQDDIQLRETSKPQACFSWPYRFLRK
YGSDKGVFSFEAGRRCDSGEGLFAFSSPRAPDICGVVAAAIARQRERLPELAMSPPCPLPRALSLPSLEP
PGELREVAPGFELPTPRKLPLTDPGPQSLPLLLSPTQEGPASGLYASVCKQTSKHTGTAEHLYENVCMLE
ASPGLTNGGPEAQEGPPGGRSPLGSPIYHNTEDLSWPGSAQDSNLEAQYRRLLELELDEAGSAGRSGAQA
GIKAKLVTLLTRERKKGPAPCDRP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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