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Report for CCDS26588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26588.1 Public Mus musculus 13 Cts7 23 108 98 CCDS HistoryNCBI Gene:56092Re-query CCDS DB by CCDS ID:26588.1Re-query CCDS DB by GeneID:56092See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021892.6 ENSMUSP00000021892.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021892.6Link to Ensembl Protein Viewer:ENSMUSP00000021892.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021892Re-query CCDS DB by Protein ID:ENSMUSP00000021892
Original member Current member EBI ENSMUST00000224986.1 ENSMUSP00000153603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224986.1Link to Ensembl Protein Viewer:ENSMUSP00000153603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224986Re-query CCDS DB by Protein ID:ENSMUSP00000153603
Original member Current member NCBI NM_001359387.1 NP_001346316.1 Accepted alive Link to Nucleotide Sequence:NM_001359387.1Link to Protein Sequence:NP_001346316.1Re-query CCDS DB by Nucleotide ID:NM_001359387Re-query CCDS DB by Protein ID:NP_001346316Link to BLAST:NP_001346316.1
Original member Current member NCBI NM_019539.4 NP_062412.1 Accepted alive Link to Nucleotide Sequence:NM_019539.4Link to Protein Sequence:NP_062412.1Re-query CCDS DB by Nucleotide ID:NM_019539Re-query CCDS DB by Protein ID:NP_062412Link to BLAST:NP_062412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346316.1 331 Q91ZF2 331 100% 0 0
NP_062412.1 331 Q91ZF2 331 100% 0 0

Chromosomal Locations for CCDS 26588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61352736 61352835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61353789 61353906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61354935 61355097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61355534 61355758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61356275 61356415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61356499 61356621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61356911 61357036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGACTCCTACTGTCTTCCTGTCCATCCTGTGCTTGGGAGTGGCCTTGGCTGCTCCAGCACCTGATTACA
ATTTGGATGCCGAGTGGGAGGAGTGGAAGAGGAGCAATGACAGAACATACAGCCCAGAGGAAGAAAAACA
GAGGAGAGCAGTGTGGGAAGGAAATGTGAAATGGATCAAACAGCACATTATGGAGAATGGCCTGTGGATG
AACAACTTCACCATAGAAATGAATGAATTTGGTGATATGACTGGTGAAGAAATGAAAATGTTGACAGAAA
GCTCATCTTATCCTCTAAGAAATGGGAAACACATCCAGAAACGCAACCCCAAAATCCCCCCAACTTTGGA
TTGGAGAAAGGAAGGCTATGTGACTCCAGTGCGAAGACAGGGAAGTTGTGGTGCATGTTGGGCTTTTTCT
GTGACTGCATGCATAGAAGGTCAACTGTTCAAGAAAACTGGCAAACTGATCCCACTGAGTGTACAGAATT
TAATGGACTGCTCAGTATCTTATGGCACCAAGGGCTGTGATGGAGGCAGACCTTATGATGCCTTCCAATA
TGTGAAGAACAATGGAGGTCTAGAAGCTGAGGCAACCTATCCATATGAAGCAAAGGCAAAACACTGCAGG
TACCGTCCTGAACGTTCTGTTGTTAAGGTCAACCGCTTTTTTGTTGTTCCAAGGAATGAAGAAGCTCTAC
TGCAAGCTCTAGTAACACATGGACCCATTGCTGTTGCAATTGATGGTTCACATGCATCCTTTCATTCATA
TCGGGGAGGTATATATCATGAGCCAAAGTGCAGAAAGGATACTCTCGACCATGGTTTACTATTGGTTGGC
TATGGCTATGAAGGCCATGAGTCAGAGAACAGGAAATATTGGCTGCTAAAGAACAGCCATGGTGAAAGAT
GGGGAGAAAATGGCTACATGAAGCTTCCCAGAGGTCAGAACAACTACTGTGGAATTGCTTCTTATGCCAT
GTACCCTGCATTGTGA

Translation (331 aa):
MTPTVFLSILCLGVALAAPAPDYNLDAEWEEWKRSNDRTYSPEEEKQRRAVWEGNVKWIKQHIMENGLWM
NNFTIEMNEFGDMTGEEMKMLTESSSYPLRNGKHIQKRNPKIPPTLDWRKEGYVTPVRRQGSCGACWAFS
VTACIEGQLFKKTGKLIPLSVQNLMDCSVSYGTKGCDGGRPYDAFQYVKNNGGLEAEATYPYEAKAKHCR
YRPERSVVKVNRFFVVPRNEEALLQALVTHGPIAVAIDGSHASFHSYRGGIYHEPKCRKDTLDHGLLLVG
YGYEGHESENRKYWLLKNSHGERWGENGYMKLPRGQNNYCGIASYAMYPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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