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Report for CCDS26632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26632.1 Public Mus musculus 13 Slc6a3 23 108 98 CCDS HistoryNCBI Gene:13162Re-query CCDS DB by CCDS ID:26632.1Re-query CCDS DB by GeneID:13162See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022100.6 ENSMUSP00000022100.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022100.6Link to Ensembl Protein Viewer:ENSMUSP00000022100.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022100Re-query CCDS DB by Protein ID:ENSMUSP00000022100
Original member Current member NCBI NM_010020.3 NP_034150.1 Accepted alive Link to Nucleotide Sequence:NM_010020.3Link to Protein Sequence:NP_034150.1Re-query CCDS DB by Nucleotide ID:NM_010020Re-query CCDS DB by Protein ID:NP_034150Link to BLAST:NP_034150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034150.1 619 Q61327 619 100% 0 0

Chromosomal Locations for CCDS 26632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73538516 73538801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73540845 73540976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73544681 73544912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73557042 73557180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73558150 73558284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73560883 73560986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73562301 73562425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73566271 73566383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73567514 73567642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73568185 73568284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73569868 73569968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73571450 73571617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73572800 73572871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73577210 73577233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGAGTAAAAGCAAATGCTCCGTGGGACCAATGTCTTCTGTGGTGGCCCCGGCTAAAGAGCCCAATGCTG
TGGGCCCCAGAGAGGTGGAGCTCATCTTGGTCAAGGAGCAGAATGGAGTGCAGCTGACCAACTCCACCCT
CATCAACCCACCGCAGACACCAGTGGAGGTTCAAGAGCGGGAGACCTGGAGCAAGAAAATCGATTTCCTG
CTCTCAGTCATCGGCTTCGCTGTGGACCTGGCCAATGTCTGGAGGTTTCCCTACCTGTGCTACAAAAATG
GTGGAGGTGCCTTCCTGGTGCCCTACCTGCTCTTCATGGTTATTGCCGGGATGCCCCTCTTCTACATGGA
GCTGGCTCTCGGGCAGTTCAACAGAGAAGGAGCTGCTGGTGTCTGGAAGATCTGCCCTGTCCTGAAAGGT
GTGGGCTTCACTGTCATCCTCATCTCTTTCTACGTGGGCTTCTTCTACAATGTCATCATTGCATGGGCAC
TGCACTACTTCTTCTCCTCCTTCACCATGGACCTCCCATGGATCCACTGCAACAACACCTGGAACAGCCC
CAACTGCTCTGATGCACATAGCAGCAACTCTAGCGATGGCCTGGGCCTCAACGACACCTTTGGGACCACA
CCCGCTGCTGAGTATTTTGAGCGTGGTGTGCTGCACCTCCATCAGAGTCGTGGCATTGATGACCTGGGCC
CTCCACGGTGGCAGCTCACAGCCTGCCTGGTGCTGGTCATTGTTCTGCTCTACTTCAGCCTGTGGAAGGG
AGTAAAGACTTCAGGGAAGGTGGTGTGGATCACAGCTACCATGCCCTATGTAGTCCTCACAGCCCTGCTC
CTGCGTGGAGTCACCCTCCCTGGGGCCATGGATGGCATCAGAGCATACCTCAGTGTGGACTTCTACCGTC
TCTGTGAGGCATCTGTGTGGATCGATGCCGCCACCCAGGTGTGCTTCTCCCTTGGCGTTGGGTTTGGGGT
GCTGATTGCCTTCTCCAGTTACAATAAGTTCACCAATAACTGCTATAGAGATGCAATCATCACCACCTCC
ATTAACTCCCTGACGAGCTTCTCCTCTGGCTTCGTTGTCTTCTCCTTCCTGGGGTACATGGCACAGAAGC
ACAATGTGCCCATCAGGGATGTGGCCACAGATGGACCTGGGTTGATCTTCATCATCTACCCTGAGGCAAT
CGCCACACTCCCGCTGTCTTCAGCCTGGGCCGCTGTCTTCTTCCTCATGCTGCTCACTCTGGGTATCGAC
AGTGCCATGGGGGGCATGGAGTCTGTGATCACTGGGCTTGTCGATGAGTTCCAGCTGCTACATCGGCATC
GAGAGCTCTTCACTCTTGGCATTGTCCTGGCTACTTTCCTGCTGTCTCTCTTCTGTGTCACCAACGGTGG
CATCTATGTCTTCACACTGCTGGACCACTTTGCAGCTGGCACATCTATCCTCTTTGGAGTGCTCATTGAA
GCCATTGGGGTGGCCTGGTTCTACGGTGTCCAGCAATTCAGTGATGACATCAAGCAGATGACTGGGCAGC
GACCCAACCTGTACTGGCGGCTATGCTGGAAGCTGGTCAGCCCCTGCTTCCTTCTGTATGTGGTCGTGGT
CAGCATTGTGACCTTCAGACCCCCACACTATGGAGCCTACATCTTCCCAGACTGGGCCAATGCCCTGGGC
TGGATCATTGCCACATCCTCCATGGCCATGGTGCCCATTTATGCCACCTATAAGTTCTGCAGCCTGCCAG
GGTCCTTCCGAGAGAAACTGGCCTATGCCATCACACCTGAGAAAGACCGCCAGCTAGTGGACAGAGGGGA
GGTGCGCCAATTCACGCTGCGCCATTGGCTGTTGGTGTAA

Translation (619 aa):
MSKSKCSVGPMSSVVAPAKEPNAVGPREVELILVKEQNGVQLTNSTLINPPQTPVEVQERETWSKKIDFL
LSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLLFMVIAGMPLFYMELALGQFNREGAAGVWKICPVLKG
VGFTVILISFYVGFFYNVIIAWALHYFFSSFTMDLPWIHCNNTWNSPNCSDAHSSNSSDGLGLNDTFGTT
PAAEYFERGVLHLHQSRGIDDLGPPRWQLTACLVLVIVLLYFSLWKGVKTSGKVVWITATMPYVVLTALL
LRGVTLPGAMDGIRAYLSVDFYRLCEASVWIDAATQVCFSLGVGFGVLIAFSSYNKFTNNCYRDAIITTS
INSLTSFSSGFVVFSFLGYMAQKHNVPIRDVATDGPGLIFIIYPEAIATLPLSSAWAAVFFLMLLTLGID
SAMGGMESVITGLVDEFQLLHRHRELFTLGIVLATFLLSLFCVTNGGIYVFTLLDHFAAGTSILFGVLIE
AIGVAWFYGVQQFSDDIKQMTGQRPNLYWRLCWKLVSPCFLLYVVVVSIVTFRPPHYGAYIFPDWANALG
WIIATSSMAMVPIYATYKFCSLPGSFREKLAYAITPEKDRQLVDRGEVRQFTLRHWLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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