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Report for CCDS26941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26941.1 Public Mus musculus 14 Ldb3 23 108 98 CCDS HistoryNCBI Gene:24131Re-query CCDS DB by CCDS ID:26941.1Re-query CCDS DB by GeneID:24131See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022327.12 ENSMUSP00000022327.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022327.12Link to Ensembl Protein Viewer:ENSMUSP00000022327.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022327Re-query CCDS DB by Protein ID:ENSMUSP00000022327
Original member Current member NCBI NM_011918.4 NP_036048.3 Accepted alive Link to Nucleotide Sequence:NM_011918.4Link to Protein Sequence:NP_036048.3Re-query CCDS DB by Nucleotide ID:NM_011918Re-query CCDS DB by Protein ID:NP_036048Link to BLAST:NP_036048.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036048.3 723 Q9JKS4-1 723 100% 0 0

Chromosomal Locations for CCDS 26941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34529460 34529549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34536565 34536680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34541868 34541988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34542427 34542607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34543973 34544417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34552177 34552322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34555343 34555528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34566857 34566893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567398 34567567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34576986 34577344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34578595 34578670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34579176 34579327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34588377 34588469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGTCTTACAGTGTGACTCTGACTGGGCCTGGGCCCTGGGGCTTCCGTCTGCAGGGAGGCAAGGACTTCA
ACATGCCCCTCACTATCTCCCGGATCACTCCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAAGGAGA
CCTGGTGGTGGCCATTGATGGCGTCAACACAGACACCATGACCCACCTGGAGGCCCAGAACAAGATCAAG
TCGGCCAGCTACAACCTGAGCCTCACTCTACAGAAGTCCAAGCGGCCTATTCCCATCTCCACGACAGCGC
CTCCCATCCAGTCCCCGCTGCCAGTGATCCCCCACCAGAAGGACCCTGCTCTGGACACGAACGGCAGCCT
GGCGACTCCCAGCCCCAGCCCTGAGGCAAGGGCCAGCCCAGGCGCCCTGGAGTTCGGGGACACCTTTAGC
TCCTCCTTCTCCCAGACCTCTGTCTGCAGCCCACTCATGGAGGCCTCGGGGCCTGTCCTTCCTCTGGGTA
GCCCAGTGGCCAAGGCCAGCTCAGAGGGTGCACAGGGCTCAGTCAGCCCCAAAGTTCTGCCAGGCCCCAG
CCAACCGAGGCAATATAACAACCCCATTGGCCTGTACTCAGCAGAGACCCTGAGGGAGATGGCTCAGATG
TATCAGATGAGCCTCCGAGGGAAGGCCTCAGGTGCTGGACTCCTAGGAGGGAGCCTCCCTGTGAAAGACT
TGGCGGTGGACAGCGCCTCTCCTGTGTACCAGGCTGTGATCAAAACCCAAAGCAAGCCGGAAGATGAGGC
TGATGAGTGGGCCCGCCGGTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACCGGG
ACAGAATACATGCAAGACCCTGATGAAGAGGCTCTGCGAAGGTCAAGCACCCCTATTGAGCATGCTCCAG
TGTGCACCAGCCAGGCCACTTCCCCGCTGCTGCCTGCTTCTGCCCAGTCGCCCGCTGCTGCCTCTCCCAT
TGCGGCCTCGCCAACCCTGGCCACAGCTGCTGCCACCCATGCTGCTGCCGCCTCTGCTGCAGGCCCTGCC
GCAAGTCCCGTGGAGAATCCGAGGCCACAGGCCTCTGCTTACAGTCCTGCAGCCGCCGCTTCTCCAGCAC
CCTCTGCCCATACCAGCTACAGCGAGGGTCCAGCTGCCCCTGCACCCAAGCCTCGGGTCGTAACCACTGC
CAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCTGCATCTTCCTACAGCCCATCTCCAGGAGCCAATTAC
AGTCCAACTCCCTATACCCCTTCGCCAGCTCCTGCTTATACCCCCTCTCCTGCTCCCACCTATACCCCCT
CACCTGCACCTACATACTCCCCTTCCCCTGCACCAGCTTATACCCCCTCACCTGCCCCAAACTATACCCC
TACACCATCAGCTGCCTACAGTGGGGGCCCTTCAGAATCTGCCAGCCGTCCACCCTGGGTGACCGATGAC
AGCTTCTCTCAGAAGTTTGCTCCTGGAAAGAGCACTACCACTGTCAGCAAGCAGACCCTGCCCCGGGGGG
CTCCAGCCTACAACCCAACAGGTCCACAAGTGACACCTCTTGCCAGGGGCACCTTCCAGAGAGCTGAGCG
CTTCCCAGCTAGCAGCCGGACTCCCCTCTGTGGGCACTGTAACAATGTCATCAGGGGCCCTTTTCTGGTG
GCCATGGGCCGCTCTTGGCACCCAGAAGAGTTCAATTGTGCCTACTGCAAGACCTCCCTAGCAGATGTGT
GCTTTGTGGAGGAGCAGAACAACGTTTACTGCGAGCGGTGTTACGAGCAGTTCTTTGCCCCGATCTGTGC
CAAATGTAACACCAAAATCATGGGGGAAGTGATGCACGCTCTGCGACAGACATGGCACACCACCTGCTTT
GTCTGTGCAGCCTGCAAGAAGCCCTTTGGGAACAGCCTCTTCCACATGGAGGATGGAGAGCCATACTGTG
AGAAAGACTACATCAACCTGTTCAGCACCAAGTGCCATGGATGCGATTTCCCTGTGGAAGCTGGTGACAA
GTTTATCGAGGCCCTGGGGCACACCTGGCATGACACCTGCTTCATTTGTGCGGTCTGCCACGTGAATCTG
GAGGGTCAGCCATTCTACTCTAAGAAAGACAAACCACTGTGCAAGAAGCACGCACATGCCATCAACGTGT
AG

Translation (723 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
SASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKDPALDTNGSLATPSPSPEARASPGALEFGDTFS
SSFSQTSVCSPLMEASGPVLPLGSPVAKASSEGAQGSVSPKVLPGPSQPRQYNNPIGLYSAETLREMAQM
YQMSLRGKASGAGLLGGSLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTG
TEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPASAQSPAAASPIAASPTLATAAATHAAAASAAGPA
ASPVENPRPQASAYSPAAAASPAPSAHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASSYSPSPGANY
SPTPYTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPPWVTDD
SFSQKFAPGKSTTTVSKQTLPRGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLV
AMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCF
VCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNL
EGQPFYSKKDKPLCKKHAHAINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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