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Report for CCDS27114.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27114.2 Public Mus musculus 14 Pck2 23 108 98 CCDS HistoryNCBI Gene:74551Re-query CCDS DB by CCDS ID:27114.2Re-query CCDS DB by GeneID:74551See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27114.1
The coding region has been updated to start at an alternate in-frame start codon that is better supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27114.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226519.1 ENSMUSP00000153733.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226519.1Link to Ensembl Protein Viewer:ENSMUSP00000153733.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226519Re-query CCDS DB by Protein ID:ENSMUSP00000153733
Original member Current member NCBI NM_028994.3 NP_083270.2 Accepted alive Link to Nucleotide Sequence:NM_028994.3Link to Protein Sequence:NP_083270.2Re-query CCDS DB by Nucleotide ID:NM_028994Re-query CCDS DB by Protein ID:NP_083270Link to BLAST:NP_083270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083270.2 640 Q8BH04 640 100% 0 0

Chromosomal Locations for CCDS 27114.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55540485 55540513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55542406 55542651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55543589 55543773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55543860 55544063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55544395 55544582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55544885 55545047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55545207 55545425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55547697 55547834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55548040 55548135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55548305 55548759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGCTGCTATGTACCTCCCCGGCCTGCGGCTTAGCCGGCACGGGCTAAGGCCCTGGTGCTGGTCACCGT
GCCGTAGCATCCAAACCCTGCATGTGCTCAGTGGAGATATGAGTCAGCTGCCGGCTGGAGTTCGAGACTT
TGTGGCGCGCAGTGCGCATCTGTGCCAACCAGAGGGCATCCACATCTGTGATGGGACCGAGGCTGAGAAC
ACTGCCATACTGGCCCTGCTGGAAGAACAGGGTCTTATCCGCAAACTCCCCAAGTATAAGAACTGCTGGC
TGGCCCGCACAGACCCCAAGGATGTGGCACGGGTAGAAAGCAAGACGGTGATTGTAACTCCTTCGCAGCG
GGACACAGTGCCTCTCCTGGCTGGTGGGGCCAGGGGGCAGCTGGGCAACTGGATGTCCCCAGATGAGTTC
CAGAGAGCTGTGGACGAGAGATTCCCAGGATGCATGCAGGGCCGCATTATGTATGTGCTTCCATTCAGCA
TGGGTCCCGTGGGCTCCCCACTCTCCCGCATTGGAGTGCAGCTCACTGACTCGGCTTACGTGGTGGCCAG
TATGCGTATTATGACCCGCCTGGGGACACCTGTACTTCAGGCCCTGGGAGATGGTGACTTCATCAAGTGT
CTGCATTCAGTGGGCCAGCCCCTGACTGGACATGGGGATCCTGTGGGCCAGTGGCCGTGCAATCCAGAAA
AAACCCTGATTGGCCACGTGCCAGACCAGCGGGAGATCGTCTCCTTCGGCAGCGGCTATGGTGGTAACTC
CTTGCTGGGCAAGAAGTGCTTTGCCCTGCGCATCGCCTCTCGCCTGGCCAGGGATGAGGGCTGGCTGGCA
GAGCACATGCTGATTTTGGGCATCACCAACCCTGCAGGGAAAAAGCGCTACGTGGCAGCTGCTTTCCCCA
GTGCCTGTGGCAAGACCAATCTGGCCATGATGAGGCCTGCATTGCCGGGCTGGAAAGTGGAGTGTGTGGG
GGATGACATCGCCTGGATGAGGTTTGACAGTGAAGGTCAACTCCGGGCCATCAACCCTGAGAATGGCTTC
TTTGGGGTGGCCCCTGGTACCTCTGCTGCCACCAATCCCAATGCCATGGCCACAATTCAGAGTAATACTC
TCTTCACCAACGTGGCTGAGACCAGTGATGGCGGTGTGTACTGGGAAGGCATTGACCAGCCTCTTCCGCC
TGGTGTCACCATAACCTCGTGGCTGGGAAAGCCCTGGAAACCTGGTGACAAGGAACCCTGTGCACATCCA
AACTCGCGCTTTTGTGTCCCGGCTCGCCAGTGCCCCATCATGGACCCAGCCTGGGAAGCACCAGAAGGTG
TCCCTATTGATGCCATCATCTTTGGAGGCCGCCGACCCAAAGGGGTACCACTGGTGTACGAGGCCTTCAA
CTGGCGTCATGGGGTGTTTGTAGGTAGCGCCATGCGCTCTGAGTCCACTGCCGCTGCGGAGCACAAAGGA
AAGACCATTATGCATGATCCCTTTGCCATGCGGCCTTTTTTTGGCTATAACTTTGGACGCTACCTGGAAC
ACTGGTTGAGCATGGAGGGACAAAAAGGTGCCCGGCTGCCTCGTATCTTCCATGTCAATTGGTTCCGGAG
AGATGAAGCAGGCCGCTTCCTGTGGCCAGGCTTTGGAGAGAATGCTCGTGTGCTAGACTGGATCTGCCGA
AGATTAGAAGGAGAAGACAGTGCCCAAGAGACTCCCATTGGGCTAGTACCAAAGGAAGGAGCCCTGGACC
TCAGTGGCCTCAGCGCAGTGGACACCAGTCAGCTGTTCTCCATCCCCAAGGACTTCTGGGAGCAGGAGGT
TCGTGATATTCGGGGCTACCTGACAGAGCAAGTCAACCAGGACCTGCCCAAGGAGGTGTTGGCTGAGCTC
GAGGCCCTGGAAGGACGTGTACAAAAAATGTGA

Translation (640 aa):
MAAMYLPGLRLSRHGLRPWCWSPCRSIQTLHVLSGDMSQLPAGVRDFVARSAHLCQPEGIHICDGTEAEN
TAILALLEEQGLIRKLPKYKNCWLARTDPKDVARVESKTVIVTPSQRDTVPLLAGGARGQLGNWMSPDEF
QRAVDERFPGCMQGRIMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGTPVLQALGDGDFIKC
LHSVGQPLTGHGDPVGQWPCNPEKTLIGHVPDQREIVSFGSGYGGNSLLGKKCFALRIASRLARDEGWLA
EHMLILGITNPAGKKRYVAAAFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGQLRAINPENGF
FGVAPGTSAATNPNAMATIQSNTLFTNVAETSDGGVYWEGIDQPLPPGVTITSWLGKPWKPGDKEPCAHP
NSRFCVPARQCPIMDPAWEAPEGVPIDAIIFGGRRPKGVPLVYEAFNWRHGVFVGSAMRSESTAAAEHKG
KTIMHDPFAMRPFFGYNFGRYLEHWLSMEGQKGARLPRIFHVNWFRRDEAGRFLWPGFGENARVLDWICR
RLEGEDSAQETPIGLVPKEGALDLSGLSAVDTSQLFSIPKDFWEQEVRDIRGYLTEQVNQDLPKEVLAEL
EALEGRVQKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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