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Report for CCDS27214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27214.1 Public Mus musculus 14 Scara5 23 108 98 CCDS HistoryNCBI Gene:71145Re-query CCDS DB by CCDS ID:27214.1Re-query CCDS DB by GeneID:71145See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022610.14 ENSMUSP00000022610.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022610.14Link to Ensembl Protein Viewer:ENSMUSP00000022610.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022610Re-query CCDS DB by Protein ID:ENSMUSP00000022610
Original member Current member NCBI NM_028903.2 NP_083179.2 Accepted alive Link to Nucleotide Sequence:NM_028903.2Link to Protein Sequence:NP_083179.2Re-query CCDS DB by Nucleotide ID:NM_028903Re-query CCDS DB by Protein ID:NP_083179Link to BLAST:NP_083179.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083179.2 491 Q8K299-1 491 100% 0 0

Chromosomal Locations for CCDS 27214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65670563 65670674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65689768 65689896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65730521 65731195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65738424 65738504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65740290 65740388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65742132 65742179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65759585 65759779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65762722 65762858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGACAACAAAGCCATGTACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCT
TTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATGGTCCATGTCACAAACGGCGGGCGGGAGG
CTGCTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTC
CTGATTCTTGTGGGTATCTTCATCTTAGCAGTGTCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGGCGC
TGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATT
GCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAACCAGACAGACTCGTTGTTG
GCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTG
AGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAGCAGAGTGACTCCGCACAGCTGGAACTCTACCA
GCTGCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCA
CGCAGGGTGGGGGTCCTGGGGGAGGAGCTGGCTGACGTGGGCGGTGCGCTCCGTGGTCTCAACCACAGCC
TGTCCTATGACGTGGCCCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGC
AGACACTCGCCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTC
AACGTGGTGACCGAGGACCTGCGTCTGAAGGACTGGGAACACTCCATCGCCTTGAGGAACATCACCCTTG
CCAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGG
ACTTCCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCCAAGGGTGATGAT
GGGAAGCTAGGGGCTACGGGCCCCATGGGCATGCGCGGATTCAAAGGTGATCGAGGCCCAAAAGGAGAGA
AAGGAGAGAGAGGAGAGAGAGCTGGTGACATGGATTTCACAATGATTCGCCTGGTGAATGGCTCCGGCCC
ACACCAGGGCCGGGTGGAGGTGTTCCATGATCGTCGTTGGGGCACAGTGTGTGACGACGGCTGGGACAAG
AAGGACGGGGACGTGGTGTGCCGCATGCTGGGCTTCCACGGGGTTGAGGAGGTGTACCGGACAGCTCGTT
TTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGGGAACCGAGAGCTCCATCTTCCA
CTGCCAGTTCTCCAAATGGGGGGTGACAAACTGTGGGCATGCTGAGGATGCTGGGGTGACTTGTACTGTC
CCCTGA

Translation (491 aa):
MDNKAMYLHTVSDRDNGSIFEEPFDGRSLSKLNLCEDGPCHKRRAGGCCTQLGSLSALKHAVLGLYLLVF
LILVGIFILAVSRPRSSPDDLKALTRNVNRLNESLRDMQLRLLQAPLQADLTEQVWKVQDALQNQTDSLL
ALAGLVQRLEGTLWGLHAQAAQTEQAMALLRDRTGQQSDSAQLELYQLQVESNRSQLLLQRHAGLLDGLA
RRVGVLGEELADVGGALRGLNHSLSYDVALHSTWLQDLQVLVSNASADTRRMRLVHMDMEMQLKQELATL
NVVTEDLRLKDWEHSIALRNITLAKGPPGPKGDQGNEGKEGKPGSPGLPGSRGLPGERGDPGLPGPKGDD
GKLGATGPMGMRGFKGDRGPKGEKGERGERAGDMDFTMIRLVNGSGPHQGRVEVFHDRRWGTVCDDGWDK
KDGDVVCRMLGFHGVEEVYRTARFGQGTGRIWMDDVNCKGTESSIFHCQFSKWGVTNCGHAEDAGVTCTV
P


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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