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Report for CCDS27223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27223.1 Public Mus musculus 14 Adra1a 23 108 98 CCDS HistoryNCBI Gene:11549Re-query CCDS DB by CCDS ID:27223.1Re-query CCDS DB by GeneID:11549See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054661.7 ENSMUSP00000053703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054661.7Link to Ensembl Protein Viewer:ENSMUSP00000053703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000054661Re-query CCDS DB by Protein ID:ENSMUSP00000053703
Original member Current member EBI ENSMUST00000159068.1 ENSMUSP00000124570.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159068.1Link to Ensembl Protein Viewer:ENSMUSP00000124570.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159068Re-query CCDS DB by Protein ID:ENSMUSP00000124570
Original member Current member EBI ENSMUST00000161339.1 ENSMUSP00000125354.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161339.1Link to Ensembl Protein Viewer:ENSMUSP00000125354.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161339Re-query CCDS DB by Protein ID:ENSMUSP00000125354
Original member NCBI NM_001271760.1 NP_001258689.1 Updated not alive Link to Nucleotide Sequence:NM_001271760.1Link to Protein Sequence:NP_001258689.1Re-query CCDS DB by Nucleotide ID:NM_001271760Re-query CCDS DB by Protein ID:NP_001258689
Current member NCBI NM_001271760.2 NP_001258689.1 Accepted alive Link to Nucleotide Sequence:NM_001271760.2Link to Protein Sequence:NP_001258689.1Re-query CCDS DB by Nucleotide ID:NM_001271760Re-query CCDS DB by Protein ID:NP_001258689Link to BLAST:NP_001258689.1
Original member NCBI NM_013461.4 NP_038489.2 Updated not alive Link to Nucleotide Sequence:NM_013461.4Link to Protein Sequence:NP_038489.2Re-query CCDS DB by Nucleotide ID:NM_013461Re-query CCDS DB by Protein ID:NP_038489
Current member NCBI NM_013461.5 NP_038489.2 Accepted alive Link to Nucleotide Sequence:NM_013461.5Link to Protein Sequence:NP_038489.2Re-query CCDS DB by Nucleotide ID:NM_013461Re-query CCDS DB by Protein ID:NP_038489Link to BLAST:NP_038489.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258689.1 466 P97718 466 100% 0 0
NP_038489.2 466 P97718 466 100% 0 0

Chromosomal Locations for CCDS 27223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66637578 66638460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66727446 66727963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGTGCTTCTTTCTGAAAATGCTTCTGAAGGCTCCAACTGCACCCACCCGCCAGCACAGGTGAACATTT
CTAAGGCCATTCTACTTGGGGTGATCTTGGGGGGCCTCATCATTTTCGGGGTCTTGGGGAATATTTTAGT
GATCCTCTCGGTGGCCTGTCATCGGCATCTGCACTCGGTGACTCACTACTACATTGTCAACCTGGCTGTG
GCAGACCTCCTCCTCACCTCCACCGTGCTGCCCTTCTCTGCCATCTTTGAGATCCTGGGCTACTGGGCCT
TTGGCAGGGTGTTCTGCAACATCTGGGCGGCGGTGGACGTCTTATGCTGCACAGCGTCCATCATGGGCCT
CTGCATCATCTCCATCGACCGATACATTGGTGTGAGCTACCCGCTGCGCTACCCCACCATTGTCACCCAG
AGGAGGGGCGTCAGGGCTCTGCTCTGCGTCTGGGCGCTTTCCTTGGTCATCTCCATCGGACCCCTGTTCG
GCTGGAGGCAGCAGGCTCCGGAGGATGAGACCATCTGCCAAATCAATGAGGAGCCAGGATACGTGCTGTT
CTCAGCGCTGGGCTCTTTCTACGTGCCACTGACCATCATCCTGGTTATGTACTGTCGAGTCTACGTGGTA
GCCAAGAGAGAAAGCCGAGGCCTCAAGTCCGGCCTCAAGACCGACAAGTCAGACTCAGAGCAAGTGACGC
TCCGTATCCACCGTAAAAATGTCCCTGCAGAAGGCAGCGGAGTAAGCAGTGCCAAGAATAAGACTCACTT
CTCCGTGAGGCTGCTCAAGTTTTCCCGAGAGAAGAAAGCCGCCAAGACGCTGGGCATTGTGGTGGGATGC
TTCGTCCTCTGCTGGCTGCCATTCTTCCTCGTGATGCCCATTGGGTCCTTCTTCCCGAATTTCAAGCCAC
CGGAAACAGTTTTCAAAATAGTATTTTGGCTTGGGTACCTAAATAGTTGCATCAACCCTATCATATACCC
ATGCTCCAGCCAGGAGTTCAAGAAAGCCTTTCAGAATGTGCTGCGAATCCAGTGTCTTCGCAGAAGGCAG
TCTTCCAAGCATGCCCTGGGCTACACTCTGCACCCACCCAGCCAGGCTGTAGAGGGGCAGCACAGAGGCA
TGGTGCGTATCCCGGTGGGCTCAGGAGAGACTTTCTATAAGATCTCCAAGACAGATGGAGTCCGTGAATG
GAAGTTTTTCTCTTCCATGCCCCAGGGATCGGCCAGGATTACCATGCCGAAGGACCAATCCGCCTGTACC
ACAGCCCGGGTGAGAAGTAAAAGCTTTTTGCAGGTCTGCTGCTGTGTGGGGTCGTCGACCCCACGCCCTG
AAGAAAATCACCAAGTTCCAACCATTAAGATCCACACCATCTCCCTCGGTGAAAACGGGGAGGAAGTCTA
G

Translation (466 aa):
MVLLSENASEGSNCTHPPAQVNISKAILLGVILGGLIIFGVLGNILVILSVACHRHLHSVTHYYIVNLAV
ADLLLTSTVLPFSAIFEILGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQ
RRGVRALLCVWALSLVISIGPLFGWRQQAPEDETICQINEEPGYVLFSALGSFYVPLTIILVMYCRVYVV
AKRESRGLKSGLKTDKSDSEQVTLRIHRKNVPAEGSGVSSAKNKTHFSVRLLKFSREKKAAKTLGIVVGC
FVLCWLPFFLVMPIGSFFPNFKPPETVFKIVFWLGYLNSCINPIIYPCSSQEFKKAFQNVLRIQCLRRRQ
SSKHALGYTLHPPSQAVEGQHRGMVRIPVGSGETFYKISKTDGVREWKFFSSMPQGSARITMPKDQSACT
TARVRSKSFLQVCCCVGSSTPRPEENHQVPTIKIHTISLGENGEEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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