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Report for CCDS27352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27352.1 Public Mus musculus 14 Tmtc4 23 108 98 CCDS HistoryNCBI Gene:70551Re-query CCDS DB by CCDS ID:27352.1Re-query CCDS DB by GeneID:70551See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037726.13 ENSMUSP00000046368.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037726.13Link to Ensembl Protein Viewer:ENSMUSP00000046368.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037726Re-query CCDS DB by Protein ID:ENSMUSP00000046368
Original member Current member EBI ENSMUST00000126867.7 ENSMUSP00000116379.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126867.7Link to Ensembl Protein Viewer:ENSMUSP00000116379.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126867Re-query CCDS DB by Protein ID:ENSMUSP00000116379
Original member Current member EBI ENSMUST00000148661.1 ENSMUSP00000121523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148661.1Link to Ensembl Protein Viewer:ENSMUSP00000121523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148661Re-query CCDS DB by Protein ID:ENSMUSP00000121523
Original member Current member NCBI NM_001360598.1 NP_001347527.1 Accepted alive Link to Nucleotide Sequence:NM_001360598.1Link to Protein Sequence:NP_001347527.1Re-query CCDS DB by Nucleotide ID:NM_001360598Re-query CCDS DB by Protein ID:NP_001347527Link to BLAST:NP_001347527.1
Original member Current member NCBI NM_001360599.1 NP_001347528.1 Accepted alive Link to Nucleotide Sequence:NM_001360599.1Link to Protein Sequence:NP_001347528.1Re-query CCDS DB by Nucleotide ID:NM_001360599Re-query CCDS DB by Protein ID:NP_001347528Link to BLAST:NP_001347528.1
Original member Current member NCBI NM_028651.3 NP_082927.1 Accepted alive Link to Nucleotide Sequence:NM_028651.3Link to Protein Sequence:NP_082927.1Re-query CCDS DB by Nucleotide ID:NM_028651Re-query CCDS DB by Protein ID:NP_082927Link to BLAST:NP_082927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347527.1 741 Q8BG19-1 741 100% 0 0
NP_001347528.1 741 Q8BG19-1 741 100% 0 0
NP_082927.1 741 Q8BG19-1 741 100% 0 0

Chromosomal Locations for CCDS 27352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 122919995 122920143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122921233 122921302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122925964 122926076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122927552 122927666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122932820 122932961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122933097 122933204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122933328 122933407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122941305 122941436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122941815 122941986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122943155 122943357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122944674 122944838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122945508 122945600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122950489 122950592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122963298 122963385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122971740 122971956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122973170 122973285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122978074 122978232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGGTTGAGCTGGATGCTGACTTGGATCACATTGTCCCATCCGTCCTTCCCCCTTTCTGGGCTAAGTTAG
TAGTGGGATTTGTTTCCCTTCTGTGTTTTGCAAGGAGCTATGATGGCGATTTTGTCTTTGATGACTCTGA
AGCTATTGTTAACAATAAGGACCTCCAGTCAGACACGCCCCTTGGGGACCTGTGGCACCATGACTTCTGG
GGCAGTAAATTGAGCAGTAACACCAGCCACAAGTCCTACCGGCCACTTACTGTCCTGACTTTCAGGATTA
ACTACTACCTGTCCGGAGGCTTTCACCCCGTGGGTTTCCATGTGGTCAACATCCTCCTGCATGGCAGCAT
CTCCATCCTCATGCTGGATGTCTTCTCAGTACTGTTTGGTGGCCTACAGTACACCGGTAAAGGCCAGAGG
GTACACCTGGCCCCCAGGGCTTCCCTGCTGGCCACGTTGCTGTTTGCTGTCCATCCAGTGCACACTGAGT
GTGTTGCTGGTGTTGTTGGCCGTGCAGACCTCCTGTGTGCCCTGTTCTTCTTGTTGTCTTTCCTTGGCTA
CTGTCAAGCATTTAAAGAAACAGGTAACAAGGAGGGAACACATTCTTCCACCTTCTGGGTATTGCTGAGT
ATCTTTCTGGGAGCTGTGGCCATGCTGTGCAAAGAGCAAGGAATCACTGTGCTGGGCTTGAATGCTGTGT
TCGATATCCTGGTGATAGGCAAACTCGACATTCTGGCAGCTGTCCGGAAGGTCCTACATAAGGACAAGTC
ACAAGAGAATGCAGGCATGTTCAAGAATGGAGGCCTCCTTTTCCGAATAGCCCTACTTACCATTGGAGGC
ACCAGCATGCTTTATATACGCTGGAAAATCATGGGAACAGGCCCACCGGCATTTACTGAGGTGGACAACC
CAGCATCCTTTGCTGACAGCATGTTGGTTAGGGCCATAAACTATAATTACTACTATTCATTGAATGCCTG
GCTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGCATCCCCCTCATTAAGTCAGTT
GGTGACTGGAGGGTAATTGCTCTAGCGGCACTTTGGCTCTGCCTAATTGGCCTAATATTCCAAGCCCTGT
GCTCTGAGGATAGCTGCAAGAGAAGAATCCTTACTCTGGGTTTGGGATTTCTTGTGATCCCCTTTCTTCC
TGCAAGCAACTTGTTTTTCCGAGTGGGCTTTGTGGTCGCAGAACGTGTCCTCTACCTTCCCAGCGCTGGG
TACTGCGTGCTGCTGACCTTTGGATTTGGAGCTCTGAGCAGACACACTAAGAAAAAGAAACCTGTTGCCG
CCATCATCCTGGGCATCCTTCTCATCAATGCACTGAGATGTGTGATACGCAGTGGTGAGTGGCGGAGTGA
AGAGCAGCTCTTTCGAAGCGCCCTGTCTGTGTGTCCCCTCAATGCTAAGGTTCACTACAACATTGGCAAA
AACCTGGCTGATCAAGGCAACCAAACAGCGGCCATCAAATATTACCGGGAAGCAGTCAGACTAAATCCCA
AGTACGTTCATGCCATGAATAACCTCGGGAATATCTTAAAAGAAAGGAATGAGCTACAGGAAGCTGAAGA
GCTGCTGTCGTTGGCTGTCCAAATACAGCCAGACTTTGCAGCCGCATGGATGAATTTGGGCATAGTTCAG
AACAGCCTGAAACGGTTTGAGGAAGCAGAGCAGAGCTACCGGACAGCGATTAAACACAGGAGGAAATACC
CAGACTGCTACTACAACCTCGGGCGGCTGTATGCAGATCTAAATCGCCACGTGGATGCATTGAACGCTTG
GAGAAATGCCACCGTACTGAAGCCGGAGCACAGCCTGGCGTGGAACAACATGATCATACTTCTGGATAAC
ACAGGTAACTTAGCCCAGGCTGAAGCTGTTGGAAGAGAGGCCCTGCAATTAATACCTAATGATCACTCCC
TTATGTTCTCATTGGCAAACGTGCTGGGGAAATCCCAGAAATACAAGGAGTCTGAAGCTTTATTCCTCAA
GGCAATTAAAGCAAATCCAAATGTTGCAAGTTACCATGGTAATTTGGCTGTGCTTTATCATCGCTGGGGA
CATCTTGACTCTGCCAAGAAACACTATGAGATCTCCTTGCAGCTTGACCCTGTGGCAGTAGGCACCAAGG
AGAATTACAGTCTTCTGAGAAGAAAGCTAGAACAAACGCAGAAGAAAGATGTCTGA

Translation (741 aa):
MVELDADLDHIVPSVLPPFWAKLVVGFVSLLCFARSYDGDFVFDDSEAIVNNKDLQSDTPLGDLWHHDFW
GSKLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGFHVVNILLHGSISILMLDVFSVLFGGLQYTGKGQR
VHLAPRASLLATLLFAVHPVHTECVAGVVGRADLLCALFFLLSFLGYCQAFKETGNKEGTHSSTFWVLLS
IFLGAVAMLCKEQGITVLGLNAVFDILVIGKLDILAAVRKVLHKDKSQENAGMFKNGGLLFRIALLTIGG
TSMLYIRWKIMGTGPPAFTEVDNPASFADSMLVRAINYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSV
GDWRVIALAALWLCLIGLIFQALCSEDSCKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSAG
YCVLLTFGFGALSRHTKKKKPVAAIILGILLINALRCVIRSGEWRSEEQLFRSALSVCPLNAKVHYNIGK
NLADQGNQTAAIKYYREAVRLNPKYVHAMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQ
NSLKRFEEAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILLDN
TGNLAQAEAVGREALQLIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANPNVASYHGNLAVLYHRWG
HLDSAKKHYEISLQLDPVAVGTKENYSLLRRKLEQTQKKDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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