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Report for CCDS27358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27358.1 Public Mus musculus 15 Ghr 23 108 98 CCDS HistoryNCBI Gene:14600Re-query CCDS DB by CCDS ID:27358.1Re-query CCDS DB by GeneID:14600See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069451.10 ENSMUSP00000069457.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069451.10Link to Ensembl Protein Viewer:ENSMUSP00000069457.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069451Re-query CCDS DB by Protein ID:ENSMUSP00000069457
Original member Current member EBI ENSMUST00000161561.7 ENSMUSP00000124064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161561.7Link to Ensembl Protein Viewer:ENSMUSP00000124064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161561Re-query CCDS DB by Protein ID:ENSMUSP00000124064
Original member Current member NCBI NM_001286370.1 NP_001273299.1 Accepted alive Link to Nucleotide Sequence:NM_001286370.1Link to Protein Sequence:NP_001273299.1Re-query CCDS DB by Nucleotide ID:NM_001286370Re-query CCDS DB by Protein ID:NP_001273299Link to BLAST:NP_001273299.1
Original member Current member NCBI NM_010284.3 NP_034414.2 Accepted alive Link to Nucleotide Sequence:NM_010284.3Link to Protein Sequence:NP_034414.2Re-query CCDS DB by Nucleotide ID:NM_010284Re-query CCDS DB by Protein ID:NP_034414Link to BLAST:NP_034414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273299.1 650 P16882-1 650 99.5385% 0 3
NP_034414.2 650 P16882-1 650 99.5385% 0 3

Chromosomal Locations for CCDS 27358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 3319742 3320722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3320989 3321058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3325898 3325988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3327974 3328142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3333347 3333525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3340919 3341091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3346509 3346532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3347472 3347601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3388648 3388713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3457930 3457999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGGATCTTTGTCAGGTCTTCTTAACCTTGGCACTGGCAGTCACCAGCAGCACATTTTCTGGAAGTGAGG
CTACACCAGCTACTCTTGGCAAAGCTTCCCCAGTTCTGCAAAGAATCAATCCAAGCCTGGGGACAAGTTC
TTCTGGAAAGCCTCGATTCACCAAGTGTCGTTCCCCTGAACTGGAGACATTTTCATGCTACTGGACAGAA
GGAGATAATCCTGATTTAAAGACCCCAGGATCTATTCAGCTGTACTATGCTAAAAGGGAAAGCCAACGAC
AAGCTGCAAGAATTGCTCATGAATGGACCCAGGAATGGAAAGAATGCCCTGATTATGTCTCTGCTGGAAA
AAACAGCTGTTACTTCAACTCATCATATACCTCCATTTGGATACCCTACTGCATCAAGCTAACTACAAAT
GGTGATTTGCTGGACCAAAAATGTTTCACTGTTGACGAAATAGTGCAACCTGATCCACCCATTGGCCTCA
ACTGGACTTTACTAAACATTAGTTTGACCGGGATTCGTGGAGACATCCAAGTGAGTTGGCAACCACCACC
CAATGCAGATGTTCTGAAGGGATGGATAATTCTGGAGTATGAAATTCAGTACAAAGAAGTAAATGAATCA
AAATGGAAAGTGATGGGCCCTATATGGTTAACATACTGTCCAGTGTACTCATTGAGAATGGATAAAGAAC
ATGAAGTGCGGGTGAGATCCAGACAACGGAGCTTTGAAAAGTACAGCGAGTTCAGCGAAGTCCTCCGTGT
AATATTTCCTCAGACGAACATATTGGAAGCATGTGAAGAAGATATCCAGTTTCCATGGTTCTTAATTATT
ATCTTTGGAATATTTGGAGTAGCAGTGATGCTATTTGTAGTTATATTTTCAAAGCAGCAAAGGATTAAGA
TGCTGATTTTACCCCCAGTCCCAGTTCCAAAGATTAAAGGGATTGATCCAGATCTTCTCAAGGAAGGGAA
GTTGGAGGAGGTGAACACCATCTTAGGCATTCATGATAACTACAAACCCGACTTCTACAATGATGATTCC
TGGGTCGAGTTCATTGAGCTAGATATTGATGAAGCAGATGTGGATGAGAAGACTGAAGGGTCTGACACAG
ACAGACTTCTAAGCAATGATCATGAGAAATCAGCTGGTATCCTTGGAGCAAAGGATGATGATTCTGGGCG
TACCAGCTGTTACGACCCTGACATTTTGGATACTGATTTCCATACCAGTGACATGTGTGATGGTACCTTG
AAGTTTGCTCAGTCACAGAAGTTAAATATGGAAGCTGATCTCTTGTGCCTTGATCAGAAGAATCTGAAGA
ACTTGCCTTATGATGCTTCCCTTGGCTCTCTGCATCCCTCCATTACCCAGACAGTAGAAGAAAACAAGCC
ACAGCCACTTTTGAGCAGCGAAACTGAGGCAACCCACCAACTCGCCTCTACACCGATGAGTAATCCCACA
TCACTGGCAAACATTGACTTTTATGCCCAAGTAAGCGACATTACACCAGCAGGTGGTGTAGTCCTTTCCC
CAGGCCAAAAGATTAAGGCAGGGATAGCCCAAGGCAATACCCAGCGGGAGGTGGCCACGCCCTGCCAAGA
AAATTACAGCATGAACAGTGCCTACTTTTGTGAGTCAGATGCCAAAAAATGCATCGCTGTGGCCCCTCGC
ATGGAAGCCACGTCTTGTATAAAACCAAGCTTTAACCAAGAGGACATTTACATCACCACAGAAAGCCTTA
CCACTACTGCCCAGATGTCTGAGACAGCAGATATTGCTCCAGATGCTGAGATGTCTGTCCCAGACTACAC
CACGGTTCACACCGTGCAGTCTCCAAGGGGCCTTATACTCAACGCAACTGCTTTGCCTTTGCCTGACAAA
AAGAATTTTCCCTCCTCGTGTGGTTATGTGAGCACAGACCAACTGAACAAAATCATGCAGTAG

Translation (650 aa):
MDLCQVFLTLALAVTSSTFSGSEATPATLGKASPVLQRINPSLGTSSSGKPRFTKCRSPELETFSCYWTE
GDNPDLKTPGSIQLYYAKRESQRQAARIAHEWTQEWKECPDYVSAGKNSCYFNSSYTSIWIPYCIKLTTN
GDLLDQKCFTVDEIVQPDPPIGLNWTLLNISLTGIRGDIQVSWQPPPNADVLKGWIILEYEIQYKEVNES
KWKVMGPIWLTYCPVYSLRMDKEHEVRVRSRQRSFEKYSEFSEVLRVIFPQTNILEACEEDIQFPWFLII
IFGIFGVAVMLFVVIFSKQQRIKMLILPPVPVPKIKGIDPDLLKEGKLEEVNTILGIHDNYKPDFYNDDS
WVEFIELDIDEADVDEKTEGSDTDRLLSNDHEKSAGILGAKDDDSGRTSCYDPDILDTDFHTSDMCDGTL
KFAQSQKLNMEADLLCLDQKNLKNLPYDASLGSLHPSITQTVEENKPQPLLSSETEATHQLASTPMSNPT
SLANIDFYAQVSDITPAGGVVLSPGQKIKAGIAQGNTQREVATPCQENYSMNSAYFCESDAKKCIAVAPR
MEATSCIKPSFNQEDIYITTESLTTTAQMSETADIAPDAEMSVPDYTTVHTVQSPRGLILNATALPLPDK
KNFPSSCGYVSTDQLNKIMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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