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Report for CCDS27400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27400.1 Public Mus musculus 15 Zfp622 23 108 98 CCDS HistoryNCBI Gene:52521Re-query CCDS DB by CCDS ID:27400.1Re-query CCDS DB by GeneID:52521See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061875.7 ENSMUSP00000059678.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061875.7Link to Ensembl Protein Viewer:ENSMUSP00000059678.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061875Re-query CCDS DB by Protein ID:ENSMUSP00000059678
Original member Current member NCBI NM_144523.3 NP_653106.1 Accepted alive Link to Nucleotide Sequence:NM_144523.3Link to Protein Sequence:NP_653106.1Re-query CCDS DB by Nucleotide ID:NM_144523Re-query CCDS DB by Protein ID:NP_653106Link to BLAST:NP_653106.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653106.1 476 Q91VY9 476 100% 0 0

Chromosomal Locations for CCDS 27400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 25984550 25985183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25986798 25987046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25987161 25987323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25991453 25991565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25996106 25996249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25997167 25997294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGGCTCTCACGTGCATCACCTGCCGGGTGGCGTTCCGCGACGCGGAGCTGCAGCGGGCGCACTACA
AGACGGACTGGCACCGCTACAACCTGCGGCGCAAGGTGGCCGCCATGGCCCCGGTGACGGCCGAGGGCTT
CCAGGAGCGGGTGCGGGCGCAGCGCGCGGTGGCCGAGGCGGCGGAGGCGAGCAAGGGCGCGGCCACCTAC
TGCACGGCGTGCGGCAAGAAGTTCGCCACCTTCAACGCCTACGAGAACCACCTCGGCTCCCGGCGGCACG
CCGAGCTGGAGCGGAAGGCGGTGCGGGCCGCGAGCCGGCGCGTGGAGCTGCTGAACGCCAAGAACCTGGA
GAAGGGGCTGGGCGCGGACGGCGTCGACAAGGACGCCGTGAACGCCGCCATCCAGCAGGCCATCAAGGCC
CAGCCCTCCACGTCCCCCAAGAAAGCGCCCTTCGTGCCCACGGACGAGTGCGGGAGGGCGGCGGCGGGCG
CACGGGGCGTCCCGGAGCGAGACCCGACGGAGAAGCCGCCCCGGCTCCAGTGGTTCGAACAGCAGGCGAA
GAAGCTGGCGAAGCAGCAGTGGGAGGACGGAGAGGAGGAGGGAGAGGAAGAGGAGGAAGACGACGAAGAC
GAAGATTGGGAAGATATTGATTCCGATGATGGATTGGAATGTGAGGACCCTGGAGTGGAGGATCAGGATG
CAGAAGATGCAGCGGCTGAGGAGAGCCCACCCCTAGGTGCCATCCCAATAACAGACTGCTTGTTTTGCTC
CCATCATTCAAGCTCCCTCGTGAAGAATGTGGCTCATATGACTAAAGTCCACAGCTTTTTTATTCCTGAT
ATAGAGTATCTTTCAGATTTGAAAGGACTAATTAAATATTTGGGAGAGAAAGTTGGTGTTGGCAAAATTT
GCTTGTGGTGCAATGAGAAAGGGAAGTCCTTCTATTCCACAGAAGCTGTACAGGCACACATGAATGACAA
AAGCCACTGTAAGCTCTTCACAGATGGTGACGCTGCCTTGGAATTTGCAGACTTCTATGATTTTAGGAGT
AGCTACCCAGACTACAAGGAGGGGCAGGATCCTGCTGAGCTTGAGGCCTTGTCCACAGACAAGATCTTGG
AATGTGATGATGAAACCATGGAGCTGATACTTCCTTCTGGTGCCAGAGTGGGTCATCGCTCCTTGATGAG
ATACTACAAACAGCGATTTGGCTTGCCAAGAGCTGTGACAGTTGCTAGGAATCAAAAGGCTGTGGGCAGA
GTTCTCCAGCAATACCGAGCCCTGGGGTGGATGGGCAGCACAGGAGCAGCTCTCATGCGTGAACGGGACA
TGCAATATGTGCAGAGGATGAAATCAAAATGGATGCTGAAGATAGGAATGAAGAACAACGCCACCAAGCA
GATGCACTTCAGGGCCCAAGTGAGGTTCTGA

Translation (476 aa):
MAALTCITCRVAFRDAELQRAHYKTDWHRYNLRRKVAAMAPVTAEGFQERVRAQRAVAEAAEASKGAATY
CTACGKKFATFNAYENHLGSRRHAELERKAVRAASRRVELLNAKNLEKGLGADGVDKDAVNAAIQQAIKA
QPSTSPKKAPFVPTDECGRAAAGARGVPERDPTEKPPRLQWFEQQAKKLAKQQWEDGEEEGEEEEEDDED
EDWEDIDSDDGLECEDPGVEDQDAEDAAAEESPPLGAIPITDCLFCSHHSSSLVKNVAHMTKVHSFFIPD
IEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRS
SYPDYKEGQDPAELEALSTDKILECDDETMELILPSGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGR
VLQQYRALGWMGSTGAALMRERDMQYVQRMKSKWMLKIGMKNNATKQMHFRAQVRF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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