NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27488.1 Public Mus musculus 15 Zhx1 23 108 98 CCDS HistoryNCBI Gene:22770Re-query CCDS DB by CCDS ID:27488.1Re-query CCDS DB by GeneID:22770See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070143.12 ENSMUSP00000066201.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070143.12Link to Ensembl Protein Viewer:ENSMUSP00000066201.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070143Re-query CCDS DB by Protein ID:ENSMUSP00000066201
Original member Current member EBI ENSMUST00000110168.7 ENSMUSP00000105797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110168.7Link to Ensembl Protein Viewer:ENSMUSP00000105797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110168Re-query CCDS DB by Protein ID:ENSMUSP00000105797
Original member Current member EBI ENSMUST00000175805.8 ENSMUSP00000134844.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175805.8Link to Ensembl Protein Viewer:ENSMUSP00000134844.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175805Re-query CCDS DB by Protein ID:ENSMUSP00000134844
Original member Current member NCBI NM_001042438.2 NP_001035903.1 Accepted alive Link to Nucleotide Sequence:NM_001042438.2Link to Protein Sequence:NP_001035903.1Re-query CCDS DB by Nucleotide ID:NM_001042438Re-query CCDS DB by Protein ID:NP_001035903Link to BLAST:NP_001035903.1
Original member Current member NCBI NM_009572.4 NP_033598.2 Accepted alive Link to Nucleotide Sequence:NM_009572.4Link to Protein Sequence:NP_033598.2Re-query CCDS DB by Nucleotide ID:NM_009572Re-query CCDS DB by Protein ID:NP_033598Link to BLAST:NP_033598.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035903.1 873 P70121 873 100% 0 0
NP_033598.2 873 P70121 873 100% 0 0

Chromosomal Locations for CCDS 27488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58052227 58054848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGGCAAGCAGACGAAAATCAACAACACCTTGCATGGTCCTTGCCAGTGAGCAGGATCCAGATCTTGAGC
TGATATCGGATTTGGATGAAGGCCCTCCCATCCTTACACCTGTAGAGAATGCTAAAGCAGAGAGTGTCTC
CAGCGATGAAGAAGTTCACGGATCTGTGGATTCTGACAATCAGCAAAATAAGAAAGTGGAAGGGGGCTAT
GAATGTAAATATTGTACTTTTCAAACTCCAGATCTAAATATGTTTACTTTCCATGTAGATTCAGAACATC
CCAATGTTGTGCTGAATTCCTCCTATGTTTGTGTTGAATGCAATTTTCTTACCAAAAGGTATGATGCACT
TTCTGAGCATAATCTGAAATACCACCCAGGAGAAGAAAATTTCAAGCTGACTATGGTGAAGCGGAATAAC
CAGACAATCTTTGAACAGACAATAAATGATCTAACTTTTGATGGCAGTTTTGTTAAAGAGGAGAATACAG
AACAAGGAGAATCCATAGATGTTTCTTCTTCGGGAATCTCCATTAGTAAAACTCCCATCATGAAAATGAT
GAAAAATAAGGTAGAGAACAAACGGATTACAGTCCACCATAACTCAGCTGAGGGCACTTCTGAAGAGAAA
GAGAATGGAGTAAAAGCAAGCCAGGAAGAAAATGCAGAAAGTGTGAGTTCTTCAGCTTTAGAATCCAATA
CAAGTACTTCCACCATCAACAGAGTGCATCCCAGTCCTGCCAGCACAGTGGTGACTCCCACAGCTGTTCT
TCCTGGGTTAGCACAGGTGATAACTGCGGTGTCTGCTCAACAGAACTCAAACTTGCTCCCTAAAGTCTTA
ATCCCCGTTAATAGCATTCCTACCTACAATGCTGCATTGGATAACAATCCTCTTCTACTTAATACCTACA
ACAAATTCCCTTATCCTACAATGTCAGAAATTACAGTTCTTTCTGCTCAAGCAAAATATACAGAGGAACA
AATCAAGATCTGGTTTTCAGCCCAACGTTTAAAGCATGGTGTTAGTTGGACTCCTGAAGAAGTAGAGGAG
GCGAGAAGAAAACAATTCAATGGAACAGTACATACTGTACCTCAGACCATAACTGTTATTCCTACACACA
TTTCCACAGGGAGTAACGGGTTACCATCTATCTTACAGACATGCCAAATTGTTGGTCAGCCAGGTCTGGT
CCTTACTCAAGTAGCTGGAACAAACACCTTGCCAGTAACAGCACCCATTGCCCTGACAGTGGCAGGGGTT
CCAAATCAAACAAATGTACAAAAGAGCCAAGTGCCTGCTGCTCAGCCTGCTACAGACACAAAACCAGCCA
CAGCAGCAGTTCCATCCTCGCCAAGTGTCAGACCTGAAGCTGCACTAGTGAACCCAGATTCATTTGGTAT
TCGGGCCAAAAAGACTAAAGAGCAGCTGGCAGAACTGAAAGTTAGCTACCTAAAAAATCAGTTTCCCCAT
GACTCAGAGATCATCAGGCTTATGAAAATAACAGGCCTTACCAAAGGCGAGATTAAAAAATGGTTTAGTG
ATACAAGGTACAACCAGAGAAATTCAAAGAGTAACCAGTGCTTACATCTCAACAATGACTCCTCTGCCAC
TATCATCATAGACTCCAGTGATGAAACCCCAGAACCCCCAGCGGCAGCTGCTTCACAGCAGAAACAGTCC
TGGAATCCCTTTCCTGACTTTGCTCCCCAGAAGTTTAAAGAGAAAACTGCAGAGCAACTCCGTGCCCTTC
AGGCAAGTTTTCTCAACAGTTCTGTACTTACTGATGAAGAAGTAAATAGGTTAAGAGCGCAAACCAAACT
TACTAGAAGAGAAATTGATGCTTGGTTTACAGAGAAAAATAAAACAAAAGCTTTAAAGGATGAGAAAATA
GAAGTAGATGAAAGTAATGTAGGTAGTTCCAAAGAAGAGCCTGGAGAAAGTTCTCCTGGAGATGAAACAG
TTGCACCTAAGTCAGGAGGGACAGGCAAGATATGTAAGAAAACACCAGAGCAGCTGCACATGCTTAAAAG
TGCATTTGTCCGAACACAGTGGCCATCAGCAGAAGAGTATGACAAGCTGGCTGAAGAGAGTGGCCTTGCC
AGAACAGATATAGTTAGTTGGTTTGGGGATACCCGTTATGCTTGGAAGAATGGAAACTTGAAATGGTATT
ACTACTATCAAAGCTCCAATTCAAGTAGTTTGAATGGTCTATCTTCCCTTAGGAGAAGAGGGAGAGGCAG
ACCCAAAGGAAGGGGCAGGGGCAGACCACGTGGTCGGCCCAGAGGTGGAAAAAGAATGAACACCTGGGAC
AGGGTACCATCGCTTATAAAGTTTAAAACTGGAACAGCAATACTTAAGGATTATTACCTGAAGCACAAAT
TTCTTAATGAGCAAGACCTTGATGAACTTGTCAACAGATCACACATGGGTTATGAGCAGGTCAGAGAGTG
GTTTGCAGAAAGACAGAGAAGATCTGAGTTAGGTATAGAATTATTTGAGGAAAATGAGGAGGAAGATGAA
GTTGTTGATGATCAGGAAGAAGATGAAGAAGAAACAGATGATAGTGACACTTGGGAACCCCCACGACATG
TGAAGCGGAAGCTTTCTAAATCGGATGACTGA

Translation (873 aa):
MASRRKSTTPCMVLASEQDPDLELISDLDEGPPILTPVENAKAESVSSDEEVHGSVDSDNQQNKKVEGGY
ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNN
QTIFEQTINDLTFDGSFVKEENTEQGESIDVSSSGISISKTPIMKMMKNKVENKRITVHHNSAEGTSEEK
ENGVKASQEENAESVSSSALESNTSTSTINRVHPSPASTVVTPTAVLPGLAQVITAVSAQQNSNLLPKVL
IPVNSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEE
ARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV
PNQTNVQKSQVPAAQPATDTKPATAAVPSSPSVRPEAALVNPDSFGIRAKKTKEQLAELKVSYLKNQFPH
DSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSATIIIDSSDETPEPPAAAASQQKQS
WNPFPDFAPQKFKEKTAEQLRALQASFLNSSVLTDEEVNRLRAQTKLTRREIDAWFTEKNKTKALKDEKI
EVDESNVGSSKEEPGESSPGDETVAPKSGGTGKICKKTPEQLHMLKSAFVRTQWPSAEEYDKLAEESGLA
RTDIVSWFGDTRYAWKNGNLKWYYYYQSSNSSSLNGLSSLRRRGRGRPKGRGRGRPRGRPRGGKRMNTWD
RVPSLIKFKTGTAILKDYYLKHKFLNEQDLDELVNRSHMGYEQVREWFAERQRRSELGIELFEENEEEDE
VVDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH