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Report for CCDS27494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27494.1 Public Mus musculus 15 Rnf139 23 108 98 CCDS HistoryNCBI Gene:75841Re-query CCDS DB by CCDS ID:27494.1Re-query CCDS DB by GeneID:75841See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036904.6 ENSMUSP00000046467.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036904.6Link to Ensembl Protein Viewer:ENSMUSP00000046467.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036904Re-query CCDS DB by Protein ID:ENSMUSP00000046467
Original member Current member NCBI NM_175226.4 NP_780435.1 Accepted alive Link to Nucleotide Sequence:NM_175226.4Link to Protein Sequence:NP_780435.1Re-query CCDS DB by Nucleotide ID:NM_175226Re-query CCDS DB by Protein ID:NP_780435Link to BLAST:NP_780435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780435.1 668 Q7TMV1 668 99.8503% 0 1

Chromosomal Locations for CCDS 27494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58889314 58889494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58898309 58900134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGCGGCGGTGGGGCCCCCGCAGCAGCAGGTGCGGATGGCCCAGCAGCAGGTCTGGGCGGCGCTCGAAG
TGGCGCTCCGGGTGCCCTGCCTCTACATCATCGACGCCATCTTCAACTCCTACTACGATTCCAGCCAAAG
CCGGTTCTGCATCGGGCTTCAGATCTTTCTCCGGCTCCTTGGTATAGTTGTATCCAGTATTGTTCTGATC
TTGTCACAGCGATCACTTTTCAAGTTTTACATGTACAGCTCAGCCTTTCTATTAGCTGCAACTTCAGTGT
TGGTGAATTACTATGCTGCTTTGCACATTGACTTCTATGGTGCCTACAACACGTCAGCGTTTGGAATCGA
GTTGCTTCCTCGGAAAGGGCCCTCACTGTGGATGGCACTCATCGTTCTGCAGCTAACCTTTGGAATTGGA
TATGTCACATTACTGCAGATTCAGTCCATCTATTCACAGTTAATGATTTTAAATATCTTGGTTCCTATAA
TTGGCTTAATCACAGAGCTGCCATTACACATCAGAGAGACAGTAGTGCTCATGTCGTCCTTGATTCTCAT
ATTTAACACAGTGCTTGTCTTGGCAGTGAAACTTAAGTGGTTTTACTACTCTACTCGGTATGTGTACTTG
TTAGTGAGGCATATGTACCGAATTTATGGATTACAGTTACTGATGGAGGACACATGGAAGAGGATTCGTT
TCCCAGACATACTTCGGGTCTTCTGGCTAACAAGAATTACAGCTCAGGCTACAGTGTTAATGTACATTTT
AAGGATGGCAAATGAAACTGAGTCCTTCTTTATTTCTTGGGATGATTTCTGGGACGTCATTTGCAATCTA
ATAATTAGTGGGTGTGATTCTACACTAACTGTACTAGGCATGAGTGCTGTAATTTCTTCAATAGCCCATT
ATTTGGGCCTTGGAATATTGGCCTTTATTGGATCAACTGAAGAAGATGACAGGCGGCTTGGCTTTGTAGC
TCCTGTTTTATTTTTCATTTTGGCTCTTCAGACTGGTTTAAGTGGGCTAAGACCTGAAGAGAGACTTATT
CGCTTAAGTAGAAACATGTGCCTTTTATTAACTGCAGTCCTGCATTTCATCCATGGGATGACAGACCCTG
TATTAATGTCGCTCAGTGCCTCCCATGTGTCATCTTTCCATAGACACTTTCCTGTGCTGTTTGTCTCTGC
TTGCCTGTTCATTCTCCCTGTCTTACTCAGTTATGTCCTTTGGCATCACTATGCACTAAATACATGGCTG
TTTGCAGTTACAGCCTTTTGTGTGGAACTCTGCTTGAAGGTAATCGTCTCCCTCACTGTCTACACGCTGT
TCATGATTGATGGCTACTATAACGTCCTCTGGGAAAAGCTTGATGACTATGTCTACTTTGTTCGCTCCAC
GGGCAATATTATCGAATTTATATTTGGAGTAGTAATGTTTGGGAATGGGGCCTATACCATGATGTTTGAG
TCAGGAAGTAAAATTCGGGCTTGTATGATGTGCCTACATGCATATTTTAACATCTACTTACAAGTAAAAA
ATGGCTGGAAGACATTCATGAATCGTAGAACTGCTGTTAAGAAAATTAATTCACTTCCTGAGATAAAAGG
GAGCCACTTGCAAGAAATAGATGATGTCTGTGCAATCTGCTATCATGAGTTCACAACATCTGCTCGTATA
ACACCGTGTAACCATTATTTCCATGCACTCTGCCTTCGGAAATGGCTGTACATTCAAGATACTTGTCCAA
TGTGCCATCAGAAAGTGTACATCGAAGATGAGATCAAGGATAACTCAAATGCATCTAACAACAACGGATT
TATTGCACCCAATGAAAATCCAAACCCAGAGGAGGCTTTAAGAGAGGATGCTGCTGGATCTGACCGAGAA
CTGAACGAGGATGACAGTACAGACTGTGATGATGATGCTCAAAGAGAAAGAAACGGGGGGATTCAGCACA
CAGGCGCAGCAGCAGCAGCCGCAGAATTTAATGATGACACTGATTAA

Translation (668 aa):
MAAVGPPQQQVRMAQQQVWAALEVALRVPCLYIIDAIFNSYYDSSQSRFCIGLQIFLRLLGIVVSSIVLI
LSQRSLFKFYMYSSAFLLAATSVLVNYYAALHIDFYGAYNTSAFGIELLPRKGPSLWMALIVLQLTFGIG
YVTLLQIQSIYSQLMILNILVPIIGLITELPLHIRETVVLMSSLILIFNTVLVLAVKLKWFYYSTRYVYL
LVRHMYRIYGLQLLMEDTWKRIRFPDILRVFWLTRITAQATVLMYILRMANETESFFISWDDFWDVICNL
IISGCDSTLTVLGMSAVISSIAHYLGLGILAFIGSTEEDDRRLGFVAPVLFFILALQTGLSGLRPEERLI
RLSRNMCLLLTAVLHFIHGMTDPVLMSLSASHVSSFHRHFPVLFVSACLFILPVLLSYVLWHHYALNTWL
FAVTAFCVELCLKVIVSLTVYTLFMIDGYYNVLWEKLDDYVYFVRSTGNIIEFIFGVVMFGNGAYTMMFE
SGSKIRACMMCLHAYFNIYLQVKNGWKTFMNRRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTSARI
TPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDEIKDNSNASNNNGFIAPNENPNPEEALREDAAGSDRE
LNEDDSTDCDDDAQRERNGGIQHTGAAAAAAEFNDDTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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