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Report for CCDS27498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27498.1 Public Mus musculus 15 Nsmce2 23 108 98 CCDS HistoryNCBI Gene:68501Re-query CCDS DB by CCDS ID:27498.1Re-query CCDS DB by GeneID:68501See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079703.10 ENSMUSP00000078641.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079703.10Link to Ensembl Protein Viewer:ENSMUSP00000078641.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079703Re-query CCDS DB by Protein ID:ENSMUSP00000078641
Original member Current member NCBI NM_026746.3 NP_081022.2 Accepted alive Link to Nucleotide Sequence:NM_026746.3Link to Protein Sequence:NP_081022.2Re-query CCDS DB by Nucleotide ID:NM_026746Re-query CCDS DB by Protein ID:NP_081022Link to BLAST:NP_081022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081022.2 247 Q91VT1-1 247 100% 0 0

Chromosomal Locations for CCDS 27498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 59378882 59379038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59416025 59416131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59455313 59455466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59591697 59591797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59592138 59592244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59601340 59601457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCCAGGACGGTCCAGTACAAGTTCAGGTTCTACCCGTTACATATCCTTCAGTGGCATAGAGTCAGCTC
TCTCCTCCTTAAAAAACTTCCAATCCTGTATCAGCTCTGGAATGGACACAGTTTCTAGTGTTGCCTTGGA
CCTTGTGGAGACTCAAACTGAAGTGAGTAGTGAGTACAGTATGGACAAGGCCATGGTTGAGTTTGCTAAA
ATGGATCGAGAACTAAGCCATTATGTTAAGGCTGTGCAGTCTACAATCAATCATGTAAAAGAAGAACGTC
CAGAAAAAGTACCAGATTTAAAATTACTGGTAGAGAAGAAATTTTTGGCTTTACAGGATAAGAACTCTGA
TGCCGACTTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATAT
GGTATTCATGCAGACAGAGAGAATGATCTGACAGAAGGAGTTGACGAAGATATGATTGTGACCCAGAGCC
AAACCAATTTCATCTGCCCCATAACACAGCTGGAAATGAAGAAGCCAGTGAAAAATAAAATGTGTGGCCA
TACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGC
CCCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCCGGATGAAGCCCTGAGAAGGG
CAATCGAGAGCCACAACAAGAAGAAAAAACGCCACTCCGAATAG

Translation (247 aa):
MPGRSSTSSGSTRYISFSGIESALSSLKNFQSCISSGMDTVSSVALDLVETQTEVSSEYSMDKAMVEFAK
MDRELSHYVKAVQSTINHVKEERPEKVPDLKLLVEKKFLALQDKNSDADFKENEKFVQFKQQLRELKKQY
GIHADRENDLTEGVDEDMIVTQSQTNFICPITQLEMKKPVKNKMCGHTYEEEAIVRMIESKHKRKKKACC
PKIGCSHTDMRMSDLIPDEALRRAIESHNKKKKRHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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