NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27499.1 Public Mus musculus 15 Trib1 23 108 98 CCDS HistoryNCBI Gene:211770Re-query CCDS DB by CCDS ID:27499.1Re-query CCDS DB by GeneID:211770See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067543.7 ENSMUSP00000068834.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067543.7Link to Ensembl Protein Viewer:ENSMUSP00000068834.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067543Re-query CCDS DB by Protein ID:ENSMUSP00000068834
Original member Current member NCBI NM_144549.4 NP_653132.1 Accepted alive Link to Nucleotide Sequence:NM_144549.4Link to Protein Sequence:NP_653132.1Re-query CCDS DB by Nucleotide ID:NM_144549Re-query CCDS DB by Protein ID:NP_653132Link to BLAST:NP_653132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653132.1 372 Q8K4K4-1 372 100% 0 0

Chromosomal Locations for CCDS 27499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 59649163 59649522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59651479 59651771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59654236 59654701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGCGGGTCGGTCCCGTGCGTTTTGCCCTGAGCGGCGCCTCGCAGCCCCGCGGTCCGGGTCTACTGTTTC
CGGCTGCCCGGGGAACCCCGGCCAAACGCCTGCTGGACACGGACGACGCGGGGGCAGTGGCGGCCAAGTG
TCCGCGCCTCTCTGAGTGCTCGAGTCCCCCCGACTACCTCAGTCCCCCTGGCTCGCCCTGCAGCCCTCAG
CCTCCGCCCTCCACGCAGGGGACCGGCGGCAGCTGTGTGAGCTCACCCGGGCCCAGCCGAATCGCCGACT
ACCTGCTGCTACCCCTAGCTGAGCGCGAGCATGTGTCCCGGGCACTGTGCATCCACACCGGCCGCGAGCT
GCGCTGCAAGGAATTCCCCATTAAACACTACCAGGACAAAATCAGGCCTTACATCCAGCTGCCGTCCCAT
AGCAACATCACTGGCATTGTGGAGGTGCTCCTTGGTGAGAGCAAGGCCTACGTCTTCTTCGAGAAGGACT
TTGGAGACATGCACTCCTATGTGCGGAGCCGAAAACGGCTTCGGGAAGAGGAGGCCGCTCGGCTCTTCAA
GCAGATTGTTTCCGCCGTCGCCCACTGCCACCAGTCGGCCATCGTGCTGGGGGACCTGAAGCTCAGGAAG
TTCGTCTTCTCCACCGAGGAGAGAACCCAGCTTAGACTGGAAAGCCTGGAAGATACTCACATCATTAAGG
GTGAAGATGATGCGCTGTCAGATAAACATGGCTGCCCAGCCTACGTGAGCCCCGAGATCCTCAACACTAC
TGGGACCTACTCTGGAAAGGCGGCGGACGTCTGGAGCCTCGGGGTGATGCTCTATACGCTTTTGGTCGGA
CGATACCCCTTTCATGACTCAGATCCGAGTGCCCTTTTTTCCAAAATCCGCCGTGGACAGTTCTGCATTC
CTGAGCACGTCTCCCCCAAAGCCAGGTGCCTCATCCGAAGCCTCCTAAGACGAGAACCTTCTGAGAGACT
CACAGCTCCTCAGATCTTACTCCATCCCTGGTTCGAGTATGTCTTGGAACCGGGCTATGTTGACTCAGAA
ATAGGAACTTCAGACCAGATTGTTCCTGAGTACCAGGAGGACAGTGACATAAGTTCCTTCTTCTGCTAG

Translation (372 aa):
MRVGPVRFALSGASQPRGPGLLFPAARGTPAKRLLDTDDAGAVAAKCPRLSECSSPPDYLSPPGSPCSPQ
PPPSTQGTGGSCVSSPGPSRIADYLLLPLAEREHVSRALCIHTGRELRCKEFPIKHYQDKIRPYIQLPSH
SNITGIVEVLLGESKAYVFFEKDFGDMHSYVRSRKRLREEEAARLFKQIVSAVAHCHQSAIVLGDLKLRK
FVFSTEERTQLRLESLEDTHIIKGEDDALSDKHGCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVG
RYPFHDSDPSALFSKIRRGQFCIPEHVSPKARCLIRSLLRREPSERLTAPQILLHPWFEYVLEPGYVDSE
IGTSDQIVPEYQEDSDISSFFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH