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Report for CCDS27510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27510.1 Public Mus musculus 15 Ccn4 23 108 98 CCDS HistoryNCBI Gene:22402Re-query CCDS DB by CCDS ID:27510.1Re-query CCDS DB by GeneID:22402See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005255.8 ENSMUSP00000005255.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005255.8Link to Ensembl Protein Viewer:ENSMUSP00000005255.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005255Re-query CCDS DB by Protein ID:ENSMUSP00000005255
Original member NCBI NM_018865.3 NP_061353.1 Updated not alive Link to Nucleotide Sequence:NM_018865.3Link to Protein Sequence:NP_061353.1Re-query CCDS DB by Nucleotide ID:NM_018865Re-query CCDS DB by Protein ID:NP_061353
Current member NCBI NM_018865.4 NP_061353.1 Accepted alive Link to Nucleotide Sequence:NM_018865.4Link to Protein Sequence:NP_061353.1Re-query CCDS DB by Nucleotide ID:NM_018865Re-query CCDS DB by Protein ID:NP_061353Link to BLAST:NP_061353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061353.1 367 O54775 367 100% 0 0

Chromosomal Locations for CCDS 27510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 66891566 66891634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66906401 66906680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66912829 66913089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66917277 66917470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66919155 66919454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAGGTGGCTCCTGCCCTGGACGCTGGCAGCCGTGGCAGTCCTGAGGGTGGGCAACATCCTGGCCACGG
CCCTCTCTCCAACCCCCACAACAATGACCTTCACCCCAGCACCACTAGAGGAAACGACTACACGCCCCGA
ATTCTGCAAGTGGCCATGTGAGTGCCCACAATCCCCACCTCGCTGCCCACTGGGCGTCAGCCTAATCACA
GATGGCTGTGAATGCTGTAAGATATGTGCCCAGCAGCTTGGGGACAACTGCACAGAGGCTGCCATCTGTG
ACCCACACCGGGGCCTCTACTGCGATTACAGTGGGGATCGCCCGAGGTACGCAATAGGAGTGTGTGCACA
GGTGGTCGGTGTGGGCTGTGTCCTGGATGGCGTACGCTACACCAATGGCGAGTCCTTCCAACCCAACTGC
AGGTACAACTGTACCTGCATTGATGGCACGGTGGGCTGCACACCGCTGTGCCTAAGCCCCAGGCCCCCAC
GCCTCTGGTGCCGCCAGCCCCGGCACGTGAGAGTCCCTGGCCAGTGCTGTGAGCAGTGGGTGTGTGATGA
TGACGCAAGGAGACCACGCCAGACTGCACTGTTGGACACCAGAGCCTTTGCAGCGTCAGGCGCCGTGGAG
CAACGGTATGAGAACTGCATAGCCTACACTAGTCCCTGGAGCCCCTGCTCTACCACCTGTGGCCTAGGTA
TCTCCACTCGGATCTCTAACGTCAATGCCCGGTGCTGGCCAGAGCAGGAAAGTCGCCTCTGCAACCTGCG
GCCATGTGATGTGGACATCCAACTACACATCAAGGCAGGGAAGAAATGCCTGGCTGTGTACCAGCCAGAG
GAGGCCACGAACTTCACTCTCGCAGGCTGTGTCAGCACACGCACCTACCGACCCAAGTACTGCGGAGTCT
GTACTGACAATAGGTGTTGCATCCCCTACAAGTCCAAGACCATCAGTGTGGATTTCCAGTGTCCAGAGGG
GCCAGGTTTCTCCCGGCAGGTCCTATGGATTAATGCTTGCTTCTGCAACCTGAGCTGCAGGAATCCTAAC
GATATCTTTGCTGACTTGGAATCTTACCCTGACTTCGAAGAGATTGCCAATTAG

Translation (367 aa):
MRWLLPWTLAAVAVLRVGNILATALSPTPTTMTFTPAPLEETTTRPEFCKWPCECPQSPPRCPLGVSLIT
DGCECCKICAQQLGDNCTEAAICDPHRGLYCDYSGDRPRYAIGVCAQVVGVGCVLDGVRYTNGESFQPNC
RYNCTCIDGTVGCTPLCLSPRPPRLWCRQPRHVRVPGQCCEQWVCDDDARRPRQTALLDTRAFAASGAVE
QRYENCIAYTSPWSPCSTTCGLGISTRISNVNARCWPEQESRLCNLRPCDVDIQLHIKAGKKCLAVYQPE
EATNFTLAGCVSTRTYRPKYCGVCTDNRCCIPYKSKTISVDFQCPEGPGFSRQVLWINACFCNLSCRNPN
DIFADLESYPDFEEIAN


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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