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Report for CCDS27531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27531.1 Public Mus musculus 15 Ly6d 23 108 98 CCDS HistoryNCBI Gene:17068Re-query CCDS DB by CCDS ID:27531.1Re-query CCDS DB by GeneID:17068See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040404.7 ENSMUSP00000047419.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040404.7Link to Ensembl Protein Viewer:ENSMUSP00000047419.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040404Re-query CCDS DB by Protein ID:ENSMUSP00000047419
Original member Current member NCBI NM_010742.1 NP_034872.1 Accepted alive Link to Nucleotide Sequence:NM_010742.1Link to Protein Sequence:NP_034872.1Re-query CCDS DB by Nucleotide ID:NM_010742Re-query CCDS DB by Protein ID:NP_034872Link to BLAST:NP_034872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034872.1 127 P35459 127 100% 0 0

Chromosomal Locations for CCDS 27531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74762356 74762588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74762751 74762849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74763509 74763560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGAAGACAGCTCTGCTCGTCCTCCTTGTCTTGGCTGTGGCCACTAGCCCAGCCTGGGCACTTCGATGTC
ACGTGTGCACCAACAGTGCCAACTGTAAGAACCCTCAGGTCTGCCCGTCCAACTTCTACTTCTGCAAAAC
CGTCACCTCAGTGGAGCCTCTGAATGGGAACCTGGTGAGGAAAGAGTGTGCAAACTCATGCACCTCCGAC
TACAGCCAGCAGGGCCATGTCAGCAGTGGTTCCGAGGTCACACAATGCTGCCAGACTGACCTATGCAACG
AGAGGCTGGTCAGCGCTGCACCTGGACATGCCCTGCTCAGCAGTGTCACCCTGGGCCTGGCAACGAGCCT
CAGCCTGCTCACTGTTATGGCTCTCTGCCTGTAA

Translation (127 aa):
MKTALLVLLVLAVATSPAWALRCHVCTNSANCKNPQVCPSNFYFCKTVTSVEPLNGNLVRKECANSCTSD
YSQQGHVSSGSEVTQCCQTDLCNERLVSAAPGHALLSSVTLGLATSLSLLTVMALCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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