NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27595.1 Public Mus musculus 15 Rpl8 23 108 98 CCDS HistoryNCBI Gene:26961Re-query CCDS DB by CCDS ID:27595.1Re-query CCDS DB by GeneID:26961See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004072.9 ENSMUSP00000004072.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004072.9Link to Ensembl Protein Viewer:ENSMUSP00000004072.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004072Re-query CCDS DB by Protein ID:ENSMUSP00000004072
Original member Current member EBI ENSMUST00000229183.1 ENSMUSP00000155657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229183.1Link to Ensembl Protein Viewer:ENSMUSP00000155657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229183Re-query CCDS DB by Protein ID:ENSMUSP00000155657
Original member Current member NCBI NM_012053.2 NP_036183.1 Accepted alive Link to Nucleotide Sequence:NM_012053.2Link to Protein Sequence:NP_036183.1Re-query CCDS DB by Nucleotide ID:NM_012053Re-query CCDS DB by Protein ID:NP_036183Link to BLAST:NP_036183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036183.1 257 P62918 257 100% 0 0

Chromosomal Locations for CCDS 27595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76904313 76904450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76904539 76904680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76904818 76905036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76905856 76905971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76906121 76906279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGGCCGTGTGATCCGAGGGCAGAGGAAAGGCGCGGGTTCTGTTTTCCGTGCGCACGTGAAGCACCGTA
AGGGCGCCGCGCGCCTACGTGCTGTGGACTTCGCGGAGCGACACGGCTACATTAAAGGCATCGTAAAGGA
CATCATTCATGACCCTGGCCGCGGCGCTCCCCTCGCCAAAGTCGTCTTTCGGGATCCCTACCGATTCAAG
AAGCGGACAGAGCTGTTCATCGCAGCGGAGGGGATCCACACTGGACAGTTCGTGTACTGCGGCAAGAAGG
CCCAGCTGAATATCGGCAATGTTTTGCCCGTGGGCACCATGCCTGAGGGTACGATCGTGTGTTGTCTGGA
GGAGAAACCTGGGGACAGGGGCAAGCTGGCCCGAGCCTCCGGGAACTACGCCACAGTCATCTCCCACAAC
CCAGAGACCAAGAAGACTCGAGTGAAGCTGCCTTCGGGGTCCAAGAAGGTCATTTCCTCTGCCAACAGAG
CCGTTGTTGGTGTTGTGGCTGGTGGGGGCAGAATTGACAAGCCTATCTTAAAGGCTGGCCGTGCCTACCA
CAAGTACAAGGCAAAGAGGAACTGCTGGCCACGTGTGCGGGGTGTGGCCATGAATCCTGTGGAGCATCCC
TTTGGAGGTGGTAACCACCAGCACATTGGCAAACCCTCCACCATCCGAAGAGATGCCCCTGCTGGGCGCA
AAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGGCTGCGTGGAACCAAAACTGTACAGGAGAAGGAGAA
CTAG

Translation (257 aa):
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK
KRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHN
PETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP
FGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH