NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27657.1 Public Mus musculus 15 Syngr1 23 108 98 CCDS HistoryNCBI Gene:20972Re-query CCDS DB by CCDS ID:27657.1Re-query CCDS DB by GeneID:20972See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009727.11 ENSMUSP00000009727.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009727.11Link to Ensembl Protein Viewer:ENSMUSP00000009727.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000009727Re-query CCDS DB by Protein ID:ENSMUSP00000009727
Original member NCBI NM_207708.1 NP_997591.1 Updated not alive Link to Nucleotide Sequence:NM_207708.1Link to Protein Sequence:NP_997591.1Re-query CCDS DB by Nucleotide ID:NM_207708Re-query CCDS DB by Protein ID:NP_997591
Current member NCBI NM_207708.2 NP_997591.1 Accepted alive Link to Nucleotide Sequence:NM_207708.2Link to Protein Sequence:NP_997591.1Re-query CCDS DB by Nucleotide ID:NM_207708Re-query CCDS DB by Protein ID:NP_997591Link to BLAST:NP_997591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997591.1 234 O55100-1 234 100% 0 0

Chromosomal Locations for CCDS 27657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 80091394 80091492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80110444 80110681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80111599 80111744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80115855 80116076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGAAGGGGGTGCGTACGGAGCGGGCAAAGCCGGGGGCGCCTTCGACCCCTACACCCTGGTGAGGCAGC
CACACACCATCCTGCGCGTCGTGTCTTGGGTCTTCTCCATCGTGGTCTTCGGCTCTATCGTGAACGAGGG
CTACCTCAACAACCCAGAGGAGGAGGAGGAGTTCTGCATCTACAACCGCAACCCCAATGCCTGCAGCTAC
GGTGTGACTGTGGGTGTGTTGGCCTTCCTCACCTGCCTGCTCTACCTGGCGCTCGATGTGTACTTCCCGC
AGATCAGCAGTGTCAAGGACCGCAAGAAGGCCGTGCTCTCTGACATCGGTGTCTCGGCCTTCTGGGCCTT
CTTCTGGTTCGTGGGTTTCTGCTTCCTGGCCAACCAGTGGCAAGTCTCCAAGCCCAAGGACAACCCTCTG
AACGAAGGGACGGACGCAGCCCGGGCTGCCATCGCCTTCTCCTTCTTCTCCATTTTCACGTGGGCGGGCC
AGGCTGTGCTAGCCTTCCAGAGGTACCAGATTGGCGCCGACTCGGCCCTCTTCTCCCAGGACTACATGGA
CCCCAGCCAGGACTCCAGCATGCCTTATGCACCCTACGTGGAGCCCAGCGCTGGGTCGGACCCTGCTGGC
ATGGGTGGCACCTACCAGCATCCAGCCAACGCCTTTGATGCTGAGCCTCAGGGCTACCAGTCGCAGGGCT
ACTGA

Translation (234 aa):
MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWVFSIVVFGSIVNEGYLNNPEEEEEFCIYNRNPNACSY
GVTVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFFWFVGFCFLANQWQVSKPKDNPL
NEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPSAGSDPAG
MGGTYQHPANAFDAEPQGYQSQGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH