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Report for CCDS27784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27784.1 Public Mus musculus 15 Vdr 23 108 98 CCDS HistoryNCBI Gene:22337Re-query CCDS DB by CCDS ID:27784.1Re-query CCDS DB by GeneID:22337See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023119.14 ENSMUSP00000023119.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023119.14Link to Ensembl Protein Viewer:ENSMUSP00000023119.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023119Re-query CCDS DB by Protein ID:ENSMUSP00000023119
Original member Current member NCBI NM_009504.4 NP_033530.2 Accepted alive Link to Nucleotide Sequence:NM_009504.4Link to Protein Sequence:NP_033530.2Re-query CCDS DB by Nucleotide ID:NM_009504Re-query CCDS DB by Protein ID:NP_033530Link to BLAST:NP_033530.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033530.2 422 P48281 422 100% 0 0

Chromosomal Locations for CCDS 27784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 97857372 97857631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97858789 97858905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97859098 97859249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97867117 97867288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97869318 97869423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97869646 97869830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97876724 97876854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97884794 97884939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGAGGCAATGGCAGCCAGCACCTCCCTGCCTGACCCTGGTGACTTTGACCGGAATGTGCCTCGGATCT
GTGGAGTGTGTGGAGACCGAGCCACGGGCTTCCACTTCAACGCTATGACCTGTGAAGGCTGCAAGGGTTT
CTTCAGGCGGAGCATGAAGCGCAAGGCCCTGTTCACCTGCCCCTTCAATGGAGATTGCCGCATCACCAAG
GACAACCGGCGACACTGCCAGGCCTGCCGGCTCAAACGCTGCGTGGACATTGGCATGATGAAGGAGTTCA
TCCTCACAGATGAGGAGGTGCAGCGTAAGCGAGAGATGATCATGAAGAGGAAGGAGGAAGAGGCCTTGAA
GGACAGTCTGAGGCCCAAGCTGTCTGAGGAGCAACAGCACATTATCGCCATCCTGCTCGATGCCCACCAC
AAGACCTACGACCCCACCTATGCCGACTTCCGGGACTTCCGGCCTCCAATTCGTGCAGACGTAAGTACAG
GGAGCTATTCTCCAAGGCCCACACTCAGCTTCTCCGGAGACTCCTCCTCAAACTCTGATCTGTACACCCC
CTCACTGGACATGATGGAACCGGCCAGCTTTTCCACGATGGATCTGAATGAAGAAGGCTCCGATGACCCC
TCTGTGACCCTGGACCTGTCTCCGCTCTCCATGCTGCCCCACCTGGCTGATCTTGTCAGTTACAGCATCC
AAAAGGTCATCGGCTTTGCCAAGATGATCCCTGGCTTCAGGGACCTCACCTCTGATGACCAGATTGTCCT
GCTTAAGTCAAGTGCCATTGAGGTGATCATGTTGCGCTCCAACCAGTCTTTTACCTTGGATGACATGTCC
TGGGACTGTGGCAGCCAAGACTACAAATATGACATCACTGATGTCTCCAGAGCTGGGCACACCCTGGAGC
TGATCGAACCCCTCATAAAGTTCCAGGTGGGGCTGAAGAAGCTGAACCTCCATGAGGAAGAACATGTGCT
GCTCATGGCCATCTGCATTGTCTCCCCAGACCGACCTGGGGTACAGGATGCTAAGCTGGTTGAAGCCATT
CAGGACCGCCTATCCAACACACTGCAGACCTACATCCGCTGCCGCCACCCGCCCCCGGGCAGCCACCAGC
TCTACGCCAAGATGATCCAGAAGCTGGCTGACCTGCGAAGCCTCAATGAGGAGCACTCCAAACAGTACCG
TTCCCTCTCCTTCCAGCCGGAGAACAGCATGAAGCTCACACCCCTTGTGCTAGAGGTGTTCGGCAATGAG
ATCTCCTGA

Translation (422 aa):
MEAMAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITK
DNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIMKRKEEEALKDSLRPKLSEEQQHIIAILLDAHH
KTYDPTYADFRDFRPPIRADVSTGSYSPRPTLSFSGDSSSNSDLYTPSLDMMEPASFSTMDLNEEGSDDP
SVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTLDDMS
WDCGSQDYKYDITDVSRAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAI
QDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNE
IS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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