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Report for CCDS27854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27854.1 Public Mus musculus 15 Krt82 23 108 98 CCDS HistoryNCBI Gene:114566Re-query CCDS DB by CCDS ID:27854.1Re-query CCDS DB by GeneID:114566See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023713.9 ENSMUSP00000023713.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023713.9Link to Ensembl Protein Viewer:ENSMUSP00000023713.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023713Re-query CCDS DB by Protein ID:ENSMUSP00000023713
Original member Current member NCBI NM_053249.3 NP_444479.2 Accepted alive Link to Nucleotide Sequence:NM_053249.3Link to Protein Sequence:NP_444479.2Re-query CCDS DB by Nucleotide ID:NM_053249Re-query CCDS DB by Protein ID:NP_444479Link to BLAST:NP_444479.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444479.2 516 Q99M74 516 100% 0 0

Chromosomal Locations for CCDS 27854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101541709 101541944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101542439 101542470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101542690 101542910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101543317 101543442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101545014 101545178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101545501 101545596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101546113 101546173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101548330 101548538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101550199 101550603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGTCATGCCGAAATTTCCAGTTGAGCCCCAGATGTGGCAACCGGAGTTTCAGCTCGTGCTCAGCCATCA
TG
CCCCGGATGGTCACCCACTATGAAGTGAGCAAGGCGCCCTGTCGGTCCGGGGGTGGCGGGGGCCTCCG
A
GCCCTGGGTTGCCTTGGCTCTCGGAGCCTGTGCAACGTGGGTTTCGGGAGGCCCCGTGTGGCCTCCAGA
TGC
GGCATGCCAGGCTTCGGGTACCGAGCGGGAGCCACCTGTGGATCTTCTGCCTGCATCACCCCTGTCA
CC
ATCAATGAGAGTCTGCTGGTCCCCCTGGAGCTGGAGATTGACCCGACCGTGCAAAGGGTGAAGAGAGA
T
GAAAAGGAGCAGATTAAGTGCCTGAATAACCGATTCGCATCCTTCATCAACAAGGTGCGGTTCCTGGAG
CAG
AAAAACAAGCTTCTGGAGACCAAGTGGAACTTCATGCAGCAGCAGAGAAGTTGCCAGAGCAACATGG
AG
CCGCTCTTCGAGGGCTACATCTGTGCCCTGCGGCGACAGCTGGACTGTGTGTCCGGGGACCACGGCAG
A
CTAGAGGCCGAGCTCTGCAGTCTCCAGGAGGCGCTGGAGGGTTATAAGAAAAAGTACGAAGAGGAGCTG
TCT
CTGCGTCCCTGTGCTGAGAATGAGTTTGTCACCCTGAAGAAGGACGTGGACACAGCCTTCCTGGTGA
AG
GCTGACCTGGAAACCAACTTGGAGGCTCTAGAACATGAGATTGAGTTCCTGAAAGCCCTGTTTGAGGA
G
GAGATCGGCCTGCTGCAGTCTCAGATCTCAGAGACTTCAGTCATCGTGAAGATGGACAACAGCCGGGAA
CTG
GATGTGGACGGCATCGTAGCCGAGATCAAGGCCCAGTATGACGACATCGCCAGCCGCAGCAAAGCAG
AA
GCAGAGGCCTGGTACCAGTGCCGGTATGAGGAGCTGAGGTTAACGGCTGGGAACCACTGTGACAACCT
A
CGCAACCGCAAAAATGAGATCCTGGAAATGAACAAGCTAATCCAGCGGCTGCAGCAGGACATTGAGGCA
GTC
AAAGGCCAGCGATGCAAGCTCGAGGGGGCCATTGCCCAGGCAGAGCAGCAGGGAGAGGCCGCCCTCA
CT
GATGCCAAGTGCAAGCTGGCAGGGCTGGAGGAGGCCTTGCAGAAGGCCAAGCAGGACATGGCCTGCCT
G
CTCAAGCAGTACCAAGAGGTGATGAACTGCAAGCTGGGGCTGGACATCGAGATCGCCACCTACAGGCGC
CTG
CTGGAGGGCGAGGAGCACAGGTTGTGTGAAGGCATCGGGCCTGTGAATATCTCTGTCAGCAGCTCCA
AA
GGTGCCGTACTCTACGAGCCCTGTGTGATGGGCACGCCCATGCTGAGGACCGAATACTGCACCGGGAC
C
ACGGGTGTCCTGAGGAACAGTGGGGGCTGCAACGTGGTGGGCACCGGTGAACTCTACATCCCCTGCGAG
CCC
CAAGGGCTCCTGGGCTGTGGAAATGGGCGGAGCTCCAGCATGAAGGTGGGGGTGGGTAGCAATTCGT
GC
AGCCGCTAG


Translation (516 aa):
MSCRNFQLSPRCGNRSFSSCSAIMPRMVTHYEVSKAPCRSGGGGGLRALGCLGSRSLCNVGFGRPRVASR
C
GMPGFGYRAGATCGSSACITPVTINESLLVPLELEIDPTVQRVKRDEKEQIKCLNNRFASFINK
VRFLE
Q
KNKLLETKWNFMQQQRSCQSNMEPLFEGYICALRRQLDCVSGDHGRLEAELCSLQEALEGYKK
KYEEEL
S
LRPCAENEFVTLKK
DVDTAFLVKADLETNLEALEHEIEFLKALFEEEIGLLQSQISETSVIVKMDNSRE
L
DVDGIVAEIKAQYDDIASRSKAEAEAWYQCR
YEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEA
V
KGQ
RCKLEGAIAQAEQQGEAALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIATYRR
L
LEGEEH
RLCEGIGPVNISVSSSKGAVLYEPCVMGTPMLRTEYCTGTTGVLRNSGGCNVVGTGELYIPCE
P
QGLLGCGNGRSSSMKVGVGSNSCSR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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