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Report for CCDS27950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27950.1 Public Mus musculus 16 Ciita 23 108 98 CCDS HistoryNCBI Gene:12265Re-query CCDS DB by CCDS ID:27950.1Re-query CCDS DB by GeneID:12265See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023147.7 ENSMUSP00000023147.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023147.7Link to Ensembl Protein Viewer:ENSMUSP00000023147.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023147Re-query CCDS DB by Protein ID:ENSMUSP00000023147
Original member Current member NCBI NM_007575.4 NP_031601.1 Accepted alive Link to Nucleotide Sequence:NM_007575.4Link to Protein Sequence:NP_031601.1Re-query CCDS DB by Nucleotide ID:NM_007575Re-query CCDS DB by Protein ID:NP_031601Link to BLAST:NP_031601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031601.1 1078 P79621-2 1078 100% 0 0

Chromosomal Locations for CCDS 27950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10488373 10488424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10501767 10501913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10502136 10502231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10503666 10503728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10503867 10503947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10506196 10506240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10506690 10506824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10508566 10508730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10509357 10509422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10510704 10512354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10513129 10513287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10514437 10514508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10517688 10517768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10518294 10518386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10520968 10521054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10523719 10523802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10523913 10523996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10525167 10525242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3237 nt):
ATGCGCTGCCTGGTTCCTGGCCCTTCTGGGTCTTACCTGCCGGAGTTGCAAGACCATAGTCTGTGTGCCA
CCATGGATCTGGGATCTCCAGAGGGCAGCTACCTGGAACTCCTTAACAGTGATGCCGACCCCCTACATCT
CTACCACCTCTATGACCAGATGGACCTGGCTGGGGAGGAGGAGATCGAACTCAGCTCAGAGCCAGACACA
GATACCATCAACTGCGACCAGTTCAGCAAGCTGTTGCAGGACATGGAACTGGATGAAGAGACCCGGGAGG
CCTATGCCAACATTGCGGAACTGGATCAGTACGTGTTCCAGGATACCCAGCTCGAGGGCCTGAGCAAGGA
CCTCTTCATAGAGCACATTGGAGCAGAGGAAGGCTTTGGTGAGAACATAGAGATCCCTGTAGAAGCAGGA
CAGAAGCCTCAGAAGAGACGCTTCCCGGAAGAGCATGCTATGGACTCAAAGCACAGGAAGCTAGTGCCCA
CCTCTAGGACCTCACTGAACTATTTGGATCTCCCCACTGGGCACATCCAGATCTTCACCACTCTGCCCCA
GGGACTCTGGCAAATCTCAGGGGCTGGCACAGGTCTCTCCAGTGTCCTAATCTACCACGGTGAGATGCCC
CAGGTCAACCAAGTGCTCCCTTCAAGCAGCCTCAGTATCCCCAGTCTCCCCGAGTCCCCAGACCGGCCTG
GCTCCACCAGCCCCTTCACACCATCTGCAGCTGACCTGCCCAGCATGCCCGAACCTGCGCTGACCTCCCG
TGTAAATGAGACAGAGGACACATCTCCCTCCCCATGCCAAGAGGGTCCCGAGTCTTCCATCAAGCTTCCA
AAATGGCCAGAGGCTGTGGAGCGATTCCAGCACTCCCTACAGGACAAATACAAGGCATTGCCCCAGAGCC
CAAGGGGTCCTCTGGTGGCCGTGGAGCTGGTACGGGCCAGGCTGGAAAGAGGCAGCAACAAGAGCCAGGA
AAGGGAGCTGGCCACTCCCGACTGGACAGAGCGCCAGCTAGCCCACGGTGGTCTGGCAGAGGTACTTCAG
GTTGTCAGTGACTGCAGGCGACCAGGAGAGACACAGGTGGTCGCTGTGCTGGGCAAGGCTGGCCAGGGAA
AGAGCCACTGGGCCAGGACAGTGAGTCACACCTGGGCATGTGGCCAGTTGCTACAATATGACTTTGTCTT
CTATGTCCCCTGTCATTGCTTGGATCGTCCCGGGGACACCTACCACCTGCGGGATCTGCTCTGTCCCCCG
AGCCTGCAGCCACTGGCCATGGATGACGAGGTCCTTGATTATATCGTGAGGCAGCCAGACCGTGTTCTGC
TCATCCTAGATGCTTTCGAGGAGCTAGAGGCCCAAGATGGCCTCCTGCACGGACCCTGTGGATCTCTGTC
CCCAGAGCCCTGCTCCCTCCGAGGACTGCTGGCTGGGATCTTCCAGCGGAAGCTACTGCGAGGCTGCACA
CTGCTCCTCACAGCCCGGCCCCGGGGCCGCCTGGCTCAGAGCCTGAGCAAGGCAGATGCCATCTTTGAGG
TGCCCAGCTTCTCTACCAAGCAGGCCAAGACTTACATGAGGCACTACTTTGAGAACTCAGGGACAGCGGG
GAACCAAGACAAGGCCCTGGGCCTCCTGGAGGGCCAGCCTCTTCTCTGCAGCTATAGTCACAGCCCTGTT
GTGTGCAGGGCTGTGTGCCAGCTCTCCAAGGCCCTGCTAGAACAGGGCACAGAGGCCCAGCTACCTTGTA
CACTTACAGGACTCTATGTCAGCCTGCTAGGTCCTGCAGCTCAGAACAGTCCTCCCGGAGCCTTAGTCGA
GCTGGCCAAGCTGGCCTGGGAGCTGGGACGAAGACACCAAAGCACCTTGCAAGAAACCCGGTTTTCATCC
GTGGAGGTGAAAACCTGGGCAGTGACCCAAGGCTTGATGCAGCAGACCCTGGAGACCACGGAGGCTCAAC
TGGCCTTCTCCAGTTTTCTGCTACAGTGTTTCCTGGGTGCTGTGTGGCTGGCACAGTGCAATGAAATCAA
AGACAAGGAGCTGCCACAGTACCTGGCCTTGACTCCGAGGAAGAAGAGACCCTATGACAACTGGCTGGAG
GGTGTACCACGCTTTCTGGCTGGATTAGTTTTCCAGCCTCGAGCCCACTGCCTGGGAGCTCTGGTGGAGC
CTGCAGTGGCTGCAGTGGCGGATAGGAAACAGAAGGTTCTTACCAGGTACCTGAAGCGCCTGAAGCTGGG
GACACTCCGGGCAGGGAGGCTGCTGGAGCTGCTCCACTGTGCCCACGAGACACAGCAACCTGGGATATGG
GAGCATGTTGCACACCAGCTCCCTGGCCACCTCTCCTTCCTGGGCACCCGGCTCACACCCCCAGATGTGT
ATGTGCTGGGCAGGGCCTTGGAGACAGCCAGCCAGGACTTCTCCTTGGACCTTCGTCAGACTGGCGTTGA
GCCTTCTGGACTGGGAAACCTCGTGGGACTCAGCTGTGTCACCAGTTTCAGGGCCTCCTTGAGTGATACA
ATGGCATTATGGGAGTCCCTTCAGCAGCAGGGAGAAGCCCAGCTACTCCAGGCGGCAGAGGAGAAGTTCA
CCATTGAGCCATTTAAAGCCAAATCCCCAAAGGATGTGGAAGACCTGGATCGTCTCGTGCAGACCCAGAG
GCTGAGAAACCCCTCAGAAGATGCAGCCAAGGATCTTCCTGCCATCCGGGACCTTAAGAAGCTAGAGTTT
GCGTTGGGCCCCATCTTGGGCCCCCAGGCTTTCCCCACACTGGCAAAGATCCTTCCAGCCTTCTCTTCTC
TGCAACACCTGGACCTGGACTCACTTAGTGAGAACAAGATCGGAGACAAGGGTGTGTCGAAGCTCTCAGC
CACCTTCCCTCAGCTGAAGGCCCTGGAGACGCTCAACTTGTCCCAAAACAACATCACTGATGTGGGTGCC
TGCAAGCTTGCAGAAGCTCTGCCAGCCCTAGCCAAGTCCCTCCTAAGGCTGAGCTTGTACAATAACTGCA
TCTGTGACAAAGGAGCCAAGAGCCTGGCACAAGTACTTCCGGACATGGTGTCCCTGCGTGTGATGGATGT
CCAGTTCAACAAGTTCACGGCTGCCGGTGCCCAGCAACTGGCCTCCAGCCTTCAGAAGTGCCCTCAGGTG
GAAACACTGGCAATGTGGACACCCACTATCCCCTTTGGGGTTCAGGAACACCTGCAGCAGCTGGATGCCA
GGATCAGTCTGAGATGA

Translation (1078 aa):
MRCLVPGPSGSYLPELQDHSLCATMDLGSPEGSYLELLNSDADPLHLYHLYDQMDLAGEEEIELSSEPDT
DTINCDQFSKLLQDMELDEETREAYANIAELDQYVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAG
QKPQKRRFPEEHAMDSKHRKLVPTSRTSLNYLDLPTGHIQIFTTLPQGLWQISGAGTGLSSVLIYHGEMP
QVNQVLPSSSLSIPSLPESPDRPGSTSPFTPSAADLPSMPEPALTSRVNETEDTSPSPCQEGPESSIKLP
KWPEAVERFQHSLQDKYKALPQSPRGPLVAVELVRARLERGSNKSQERELATPDWTERQLAHGGLAEVLQ
VVSDCRRPGETQVVAVLGKAGQGKSHWARTVSHTWACGQLLQYDFVFYVPCHCLDRPGDTYHLRDLLCPP
SLQPLAMDDEVLDYIVRQPDRVLLILDAFEELEAQDGLLHGPCGSLSPEPCSLRGLLAGIFQRKLLRGCT
LLLTARPRGRLAQSLSKADAIFEVPSFSTKQAKTYMRHYFENSGTAGNQDKALGLLEGQPLLCSYSHSPV
VCRAVCQLSKALLEQGTEAQLPCTLTGLYVSLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQETRFSS
VEVKTWAVTQGLMQQTLETTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLE
GVPRFLAGLVFQPRAHCLGALVEPAVAAVADRKQKVLTRYLKRLKLGTLRAGRLLELLHCAHETQQPGIW
EHVAHQLPGHLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGVEPSGLGNLVGLSCVTSFRASLSDT
MALWESLQQQGEAQLLQAAEEKFTIEPFKAKSPKDVEDLDRLVQTQRLRNPSEDAAKDLPAIRDLKKLEF
ALGPILGPQAFPTLAKILPAFSSLQHLDLDSLSENKIGDKGVSKLSATFPQLKALETLNLSQNNITDVGA
CKLAEALPALAKSLLRLSLYNNCICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQV
ETLAMWTPTIPFGVQEHLQQLDARISLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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