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Report for CCDS28204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28204.1 Public Mus musculus 16 Nectin3 23 108 98 CCDS HistoryNCBI Gene:58998Re-query CCDS DB by CCDS ID:28204.1Re-query CCDS DB by GeneID:58998See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023335.12 ENSMUSP00000023335.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023335.12Link to Ensembl Protein Viewer:ENSMUSP00000023335.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023335Re-query CCDS DB by Protein ID:ENSMUSP00000023335
Original member Current member NCBI NM_021496.3 NP_067471.1 Accepted alive Link to Nucleotide Sequence:NM_021496.3Link to Protein Sequence:NP_067471.1Re-query CCDS DB by Nucleotide ID:NM_021496Re-query CCDS DB by Protein ID:NP_067471Link to BLAST:NP_067471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067471.1 510 Q9JLB9-2 510 100% 0 0

Chromosomal Locations for CCDS 28204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 46395096 46395272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46396080 46396142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46436354 46436438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46437930 46438068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46454624 46454775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46458114 46458231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46458815 46459111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46463818 46464159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46496615 46496774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGCGCGGACCCCGGGCCCGGCCCCGTTGTGTCCTGGAGGCGGCAAAGCACAACTTTCCTCGGCGTTTC
CTCCCGCGGCCGGACTGCTGCTGCCGGCCCCGACGCCGCCGCCGCTGCTGCTGCTGCTTATTCCCCTGCT
TCTCTTCTCCCGGCTCTGTGGTGCCTTAGCTGGATCAATTATTGTGGAGCCACATGTCACAGCAGTGTGG
GGAAAGAATGTTTCATTGAAGTGTTTAATTGAAGTGAATGAAACTATAACCCAGATCTCATGGGAGAAGA
TACATGGCAAAAGTACACAGACTGTTGCAGTTCATCATCCTCAGTATGGATTCTCTGTTCAAGGAGATTA
TCAGGGAAGAGTCTTGTTTAAAAACTATTCACTTAATGATGCAACAATTACTCTGCATAACATAGGCTTC
TCAGATTCTGGAAAATATATATGCAAAGCCGTTACATTCCCACTTGGAAATGCTCAGTCCTCTACAACAG
TGACTGTGTTAGTTGAACCCACAGTGAGCCTGATAAAAGGGCCGGATTCTTTAATTGATGGAGGGAATGA
GACAGTAGCAGCCGTTTGTGTAGCAGCCACTGGAAAGCCAGTCGCACAGATTGACTGGGAAGGTGATCTT
GGTGAAATGGAATCTAGTACAACTTCTTTTCCTAATGAAACAGCAACGATTGTCAGCCAATACAAGCTGT
TTCCCACAAGATTTGCTCGAGGAAGGCGAATTACTTGTGTTGTAAAACATCCAGCCTTAGAAAAGGACAT
TCGCTACTCTTTCATACTAGACATACAGTATGCTCCTGAAGTTTCAGTAACAGGATATGATGGAAATTGG
TTCGTGGGAAGAAAAGGTGTTAACCTCAAGTGTAATGCTGATGCAAACCCTCCACCCTTCAAGTCCGTGT
GGAGCAGGTTGGATGGACAATGGCCTGATGGTTTATTGGCGTCAGATAATACTCTTCATTTTGTCCATCC
ATTGACTGTCAATTATTCTGGCGTTTATGTCTGTAAAGTATCAAATTCCCTTGGTCAAAGAAGTGATCAA
AAGGTTATCTACATTTCAGACATCCCGCTTACGCAGACCTCATCCATAGCAGTGGCTGGAGCCGTGATTG
GAGCTGTCCTGGCCCTCTTCATCATCACCGTCTTTGTGACTGTGTTGCTGACGCCTCGGAAAAAGAGACC
GTCCTATCTTGACAAAGTAATCGACCTTCCACCTACACATAAGCCACCCCCTGTATATGAAGAACGAATT
CCTTCTCTCCCTCAGAAAGACCTTCTTGGCCAGACTGAACACTTGCCTTTGCAGACTCAGTTCAAGGAGA
AAGGAGCTGGTGGTCTTCAGCCCTCTAATGGACCAATTAGCAGGAGATTTGACTATGAGGATGAGAGCAC
AATGCAAGAAGATGGAACTCAGCGCATGTGCCCCCTTTATAGCCAGATGTGCCACCAAGACCGAAGCCCT
CGCCAACATCACCCACGCAACCCCGAGAGACTCTACATCAACCCACGAGAACATTATGTGTGA

Translation (510 aa):
MARTPGPAPLCPGGGKAQLSSAFPPAAGLLLPAPTPPPLLLLLIPLLLFSRLCGALAGSIIVEPHVTAVW
GKNVSLKCLIEVNETITQISWEKIHGKSTQTVAVHHPQYGFSVQGDYQGRVLFKNYSLNDATITLHNIGF
SDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAVCVAATGKPVAQIDWEGDL
GEMESSTTSFPNETATIVSQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNW
FVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTVNYSGVYVCKVSNSLGQRSDQ
KVIYISDIPLTQTSSIAVAGAVIGAVLALFIITVFVTVLLTPRKKRPSYLDKVIDLPPTHKPPPVYEERI
PSLPQKDLLGQTEHLPLQTQFKEKGAGGLQPSNGPISRRFDYEDESTMQEDGTQRMCPLYSQMCHQDRSP
RQHHPRNPERLYINPREHYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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