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Report for CCDS28314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28314.1 Public Mus musculus 16 Tiam1 23 108 98 CCDS HistoryNCBI Gene:21844Re-query CCDS DB by CCDS ID:28314.1Re-query CCDS DB by GeneID:21844See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002588.10 ENSMUSP00000002588.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002588.10Link to Ensembl Protein Viewer:ENSMUSP00000002588.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002588Re-query CCDS DB by Protein ID:ENSMUSP00000002588
Original member Current member EBI ENSMUST00000163370.7 ENSMUSP00000132137.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163370.7Link to Ensembl Protein Viewer:ENSMUSP00000132137.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163370Re-query CCDS DB by Protein ID:ENSMUSP00000132137
Original member Current member NCBI NM_001145886.1 NP_001139358.1 Accepted alive Link to Nucleotide Sequence:NM_001145886.1Link to Protein Sequence:NP_001139358.1Re-query CCDS DB by Nucleotide ID:NM_001145886Re-query CCDS DB by Protein ID:NP_001139358Link to BLAST:NP_001139358.1
Original member NCBI NM_009384.3 NP_033410.2 Updated not alive Link to Nucleotide Sequence:NM_009384.3Link to Protein Sequence:NP_033410.2Re-query CCDS DB by Nucleotide ID:NM_009384Re-query CCDS DB by Protein ID:NP_033410
Current member NCBI NM_009384.4 NP_033410.2 Accepted alive Link to Nucleotide Sequence:NM_009384.4Link to Protein Sequence:NP_033410.2Re-query CCDS DB by Nucleotide ID:NM_009384Re-query CCDS DB by Protein ID:NP_033410Link to BLAST:NP_033410.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139358.1 1591 Q60610 1591 99.9371% 0 1
NP_033410.2 1591 Q60610 1591 99.9371% 0 1

Chromosomal Locations for CCDS 28314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89789122 89789591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89793002 89793174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89794678 89794765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89798032 89798134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89798650 89798708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89799961 89800069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89804693 89804811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89805083 89805262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89809368 89809476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89811470 89811595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89811885 89811953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89812948 89813127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89821878 89821981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89833010 89833234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89837759 89837845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89843253 89843334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89849650 89849754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89855845 89856015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89858599 89858673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89860205 89860351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89865234 89865419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89867510 89867734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89877038 89877210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89884678 89885125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89897605 89898567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4776 nt):
ATGGGAAACGCAGAAAGCCAAAATGTAGACCACGAGTTTTATGGAGAAAAGCATGCCAGCCTGGGGCGGA
AGCACACTTCACGCTCCCTGCGGCTGTCACACAAGACCCGGAGGACACGGCATGCTTCCTCCGGGAAGGC
GATCCACAGGAACTCTGAAGTGAGCACCCGGTCCAGCAGCACGCCCAGCATCCCCCAGTCCCTGGCTGAA
AATGGCCTGGAGCCCTTCTCCCAAGAAGGCGCCCTAGACGACTTCGGGGACCCCATCTGGGTGGACCGAG
TAGATATGGGCTTGAGACCCGTATCTTACACCGATTCTTCCGTCACTCCCAGCGTAGATGGCAGCATCGT
CCTCACTGCAGCCTCTGTGCAGAGCATGCCAGACTCAGAGGAGAGCCGGCTTTACGGGGATGACGCTACG
TACTTGGCTGAGGGAGGCAGGAGGCAGTGTCCCTATACATCCAATGGGCCCACATTCATGGAGACAGCGA
GCTTTAAGAAGAAGCGCTCCAAATCTGCAGACATCTGGCGGGAGGACAGCCTGGAATTCTCACTCTCAGA
TCTGAGCCAAGAACATTTAACAAGCAACGAAGAAATCTTGGGTTCCGCGGAAGAGAAGGATTGCGAGGAG
GCTCGGGGGATGGAAACAGAGGCGAGTCCCCGGCAGCTCAGCACCTGTCAGCGAGCCAACTCCCTGGGTG
ACTTGTATGCTCAGAAAAACTCTGGGGTGAAGGCTAATGGAGGACCGAGGAACAGATTCTCAAGCTACTG
CCGGAATTTGGTGTCGGATATTCCCGATCTTGCAAAGCATAAGATGCCACCGGCTGCTGCCGAAGAGACT
CCTCCGTACAGTAATTACAACACGCTTCCCTGTAGGAAGTCGCACTGTCTTTCCGAGGGTGCCACCAACC
CACAAATTAGCCTTAGCAAGAGCATGCAAGGCAGAAGAGCAAAAACCACCCAGGATGTTAACACAGGCGA
GGGCAGCGAGTTTGCGGACAGTGGGATCGAAGGGGCCACCACCGACACGGACCTCTTGTCCAGGAGATCC
AATGCCACCAACTCAAGCTACTCGCCCCCCACAGGCCGAGCCTTTGTGGGCAGCGACAGCGGCAGCAGTT
CAACAGGGGATGCTGCGCGCCAGGGGGTGTACGAGAACTTCAGGCGGGAACTGGAGATGAGTACCACCAA
CAGTGAGAGCCTGGAGGAGGCTGGCTCTGCGCACAGCGATGAGCAGAGCAGCGGAACCCTCAGTTCCCCG
GGCCAGTCGGACATCCTGCTAACGGCTGCGCAGGGCACTGTGCGGAAGGCTGGAGCGCTGGCAGTCAAGA
ACTTCCTGGTCCACAAGAAGAATAAGAAGGTGGAGTCGGCTACCCGGAGGAAGTGGAAGCACTACTGGGT
GTCCCTGAAAGGTTGCACGCTCTTTTTCTATGAGACTGATGGCAGGTCTGGGATAGACCACAACAGTGTC
CCCAAGCACGCCGTCTGGGTGGAGAACAGCATCGTGCAGGCTGTGCCTGAGCACCCCAAGAAAGACTTCG
TCTTCTGCCTCAGCAACTCCCTGGGTGACGCCTTCCTCTTCCAGACCACGAGCCAGACAGAGCTGGAGAA
CTGGATCACCGCCATCCACTCTGCCTGCGCAGCTGCCGTCGCAAGGCACCACCACAAGGAGGACACGCTC
CGCCTCCTCAAGTCGGAAATCAAGAAGCTGGAGCAGAAGATCGACATGGACGAGAAGATGAAGAAGATGG
GGGAGATGCAGCTGTCTTCCGTCACCGACTCGAAGAAGAAGAAGACCATCCTAGACCAGATCTTCGTTTG
GGAGCAGAACCTCGAACAGTTCCAGATGGACCTGTTCCGATTCCGCTGTTACCTCGCCAGCCTCCAGGGC
GGGGAGCTGCCAAACCCCAAAAGGCTGCTTGCTTTTGCGAGCCGGCCCACGAAGGTGGCCATGGGCCGCC
TCGGGATCTTCTCCGTGTCATCTTTTCATGCCCTGGTGGCAGCCCGGACTGGTGAGATCGGAGTGAGAAG
GCGTACTCAGGCCATGTCCAGGTCTGCAAGCAAGCGAAGGAGCAGGTTTTCTTCTCTCTGGGGCCTAGAC
ACTACCTCCAAAAAGAAGCAGGGACGCCCAACCATCAACCAGGTGTTTGGAGAGGGGACTGATGCTGTAA
AGAGATCTTTAGAGGGAATATTTGATGACACTGTTCCAGATGGCAAGAGGGAGAAGGAAGTGGTCTTACC
CAGTGTCCACCAGCACAACCCCGACTGTGACATTTGGGTCCATGAATATTTCACTCCATCCTGGTTCTGT
CTACCCAACAACCAGCCAGCCTTGACGGTTGTCCGGCCAGGGGACACTGCGAGGGACACCTTGGAGCTCA
TTTGCAAGACACATCAACTGGATCATTCCGCCCATTACCTGCGCCTGAAATTCCTAATGGAGAACAGAGT
GCAGTTCTACATCCCGCAGCCCGAGGAGGACATTTACGAGCTGCTTTACAAAGAAATTGAAATCTGTCCA
AAAGTCACCCAGAATATCCACATTGAGAAGTCAGACGCGGCCGCTGATAATTACGGGTTTTTGCTTTCTT
CTGTGGATGAAGATGGCATTCGAAGGCTCTACGTGAACAGTGTCAAGGAAACCGGGTTAGCTTCCAAGAA
AGGCCTGAAGGCGGGGGATGAGATTCTCGAGATCAATAATCGTGCTGCTGGTACCCTGAACTCATCTATG
CTCAAAGATTTCCTCTCACAGCCCTCCCTGGGCCTCCTGGTGAGGACCTACCCTGAGCCAGAGGGAGGCG
TGGAGCTGCTGGAGAACCCTCCGCACCGAGTGGACGGCCCTGTGGACCTTGGCGAGAGCCCCCTCGCCTT
CCTCACCAGCAACCCAGGGCACAGCCTCTCCAGTGAGCAGGGCAGCAGTGCTGAGACAGCTCCAGAAGAG
GGCGAAGGACCGGACTTGGAGTCTTCTGATGAGACAGATCACAGCAGCAAGAGCACAGAACAGGTTGCAG
CGTTTTGCCGGAGTCTGCACGAGATGAGCCCCTCTGACTCAAGCCCGTCCCCTCAGGATGCCACAAGCCC
TCAGCTGGCAACCACACGACAGCTGTCGGATGCGGATAAGCTGCGCAAGGTGATCTGTGAACTGCTGGAG
ACTGAACGCACCTATGTGAAAGACTTAAACTGCCTCATGGAGAGATACCTGAAGCCCCTTCAGAAGGAGA
CCTTTCTCACCCAGGATGAGCTTGATGTACTTTTTGGAAATTTAACCGAAATGGTGGAGTTTCAAGTCGA
GTTCCTTAAGACTCTAGAAGATGGAGTAAGACTGGTCCCTGACTTGGAAAAGCTGGAGAAGGTTGACCAG
TTCAAGAAAGTGCTCTTCTCTCTGGGGGGATCCTTCCTGTACTACGCGGACCGCTTCAAGCTCTACAGTG
CCTTCTGTGCGAGCCACACAAAAGTCCCCAAGGTCCTGGTGAAAGCCAAGACGGACACAGCCTTCAAGGC
GTTCCTCGATGCCCAGAACCCGAGGCAGCAGCACTCATCCACGCTGGAGTCTTACCTCATCAAGCCCATC
CAGAGGGTCCTCAAGTACCCGCTTCTGCTCAGGGAGCTGTTTGCGCTGACCGATGCGGAGAGCGAGGAAC
ACTACCACCTGGACGTGGCCATCAAGACTATGAACAAGGTCGCCAGTCACATCAATGAGATGCAGAAGAT
CCACGAAGAGTTTGGTGCTGTGTTTGACCAGCTGATTGCTGAGCAGACGGGAGAGAAGAAAGAGGTTGCA
GATCTGAGCATGGGTGACCTGCTCTTGCACACCAGCGTCATCTGGCTGAACCCACCCGCCTCACTGGGAA
AGTGGAAAAAGGAGCCAGAATTAGCAGCCTTCGTCTTCAAAACGGCCGTGGTCCTTGTATATAAAGACGG
TTCCAAGCAGAAGAAGAAACTTGTTGGCTCTCACAGGCTGTCAATCTACGAGGAGTGGGACCCTTTCCGG
TTTCGCCACATGATCCCTACCGAAGCTTTGCAGGTCCGAGCTCTGCCCAGTGCAGATGCAGAGGCAAATG
CGGTATGCGAAATTGTCCACGTGAAATCAGAGTCAGAAGGGAGGCCCGAGCGGGTTTTCCACCTCTGCTG
CAGTTCCCCAGAGAGCAGAAAGGACTTTCTGAAGTCTGTGCATTCGATCCTGCGAGATAAACACAGAAGA
CAGCTCCTCAAAACGGAAAGCCTTCCGTCAGCCCAGCAGTATGTCCCCTTTGGAGGCAAGAGATTGTGTG
CGCTTAAAGGCGCCAGGCCGGCCATGAGCAGGGCAGTGTCTGCCCCAAGCAAGTCTCTTGGGAGGAGGAG
GCGGCGACTGGCCCGAAACAGGTTTACCATCGATTCAGACGCCATCTCAGCCAGCAGCCCGGAGAAAGAG
CCCCAGCAGCCCGCCGGTGGTGGGGACACTGACCGATGGGTAGAGGAACAGTTCGATCTTGCTCAGTACG
AGGAGCAGGATGACATCAAGGAGACAGACATCCTCAGTGACGATGACGAATTCTGTGAGTCCCTGAAGGG
CGCCTCAGTGGACAGAGACCTTCAGGAGCAGCTTCAGGCTGCCTCCATCAGTCAGCGGGCCCGAGGCCGG
AGAACCCTCGATAGCCACGCCTCCCGCATGACACAGCTCAAGAAGCAAGCGGCCCTCTCGGGCATCAACG
GGGGCCTGGAGAGTGCGAGCGAGGAAGTCATTTGGGTCAGGCGCGAAGACTTTGCCCCCTCCAGGAAACT
GAACACGGAGATATGA

Translation (1591 aa):
MGNAESQNVDHEFYGEKHASLGRKHTSRSLRLSHKTRRTRHASSGKAIHRNSEVSTRSSSTPSIPQSLAE
NGLEPFSQEGALDDFGDPIWVDRVDMGLRPVSYTDSSVTPSVDGSIVLTAASVQSMPDSEESRLYGDDAT
YLAEGGRRQCPYTSNGPTFMETASFKKKRSKSADIWREDSLEFSLSDLSQEHLTSNEEILGSAEEKDCEE
ARGMETEASPRQLSTCQRANSLGDLYAQKNSGVKANGGPRNRFSSYCRNLVSDIPDLAKHKMPPAAAEET
PPYSNYNTLPCRKSHCLSEGATNPQISLSKSMQGRRAKTTQDVNTGEGSEFADSGIEGATTDTDLLSRRS
NATNSSYSPPTGRAFVGSDSGSSSTGDAARQGVYENFRRELEMSTTNSESLEEAGSAHSDEQSSGTLSSP
GQSDILLTAAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSV
PKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTL
RLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQG
GELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAARTGEIGVRRRTQAMSRSASKRRSRFSSLWGLD
TTSKKKQGRPTINQVFGEGTDAVKRSLEGIFDDTVPDGKREKEVVLPSVHQHNPDCDIWVHEYFTPSWFC
LPNNQPALTVVRPGDTARDTLELICKTHQLDHSAHYLRLKFLMENRVQFYIPQPEEDIYELLYKEIEICP
KVTQNIHIEKSDAAADNYGFLLSSVDEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAAGTLNSSM
LKDFLSQPSLGLLVRTYPEPEGGVELLENPPHRVDGPVDLGESPLAFLTSNPGHSLSSEQGSSAETAPEE
GEGPDLESSDETDHSSKSTEQVAAFCRSLHEMSPSDSSPSPQDATSPQLATTRQLSDADKLRKVICELLE
TERTYVKDLNCLMERYLKPLQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQ
FKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQQHSSTLESYLIKPI
QRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVA
DLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFR
FRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHRR
QLLKTESLPSAQQYVPFGGKRLCALKGARPAMSRAVSAPSKSLGRRRRRLARNRFTIDSDAISASSPEKE
PQQPAGGGDTDRWVEEQFDLAQYEEQDDIKETDILSDDDEFCESLKGASVDRDLQEQLQAASISQRARGR
RTLDSHASRMTQLKKQAALSGINGGLESASEEVIWVRREDFAPSRKLNTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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