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Report for CCDS28475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28475.1 Public Mus musculus 17 Amdhd2 23 108 98 CCDS HistoryNCBI Gene:245847Re-query CCDS DB by CCDS ID:28475.1Re-query CCDS DB by GeneID:245847See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040735.11 ENSMUSP00000036141.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040735.11Link to Ensembl Protein Viewer:ENSMUSP00000036141.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040735Re-query CCDS DB by Protein ID:ENSMUSP00000036141
Original member Current member NCBI NM_172935.4 NP_766523.2 Accepted alive Link to Nucleotide Sequence:NM_172935.4Link to Protein Sequence:NP_766523.2Re-query CCDS DB by Nucleotide ID:NM_172935Re-query CCDS DB by Protein ID:NP_766523Link to BLAST:NP_766523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766523.2 409 Q8JZV7 409 100% 0 0

Chromosomal Locations for CCDS 28475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24155997 24156085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24156571 24156672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24157528 24157596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24157740 24157847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24157918 24158062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24158144 24158232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24158310 24158522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24158640 24158694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24162976 24163115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24163196 24163332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24163582 24163664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCGTAGCGGGCAGTGCGCAGCGGGGGCCCCGGTGCTCCAGTTCACCAACTGCCGCATCCTGCGTGGCG
GCACGCTCCTCAGGGAGGATCTGTGGGTGCGCGGGGGCCGAATCCTGGACCCAGAAAAGCTGTTTTTTGA
GGAGAGGCGTGTGGCTGATGAGCAGCGGGACTGCGGAGGCCGCATCCTGGCGCCTGGCTTTATCGATGTG
CAGATCAACGGTGGATTTGGTGTTGACTTCTCCAAGGCTACGGAGGACGTGGGTTCGGGGGTCGCCCTAG
TGGCCCGGAGGCTCCTGTCCCACGGTGTCACCTCCTTCTGTCCCACCCTGGTCACCTCCCCACCAGAGGT
TTATCACAAGGTCCTTCCTCAGATCCCTGTGAAGAGTGGAGGTCCCCATGGGGCAGGGGTCCTCGGGGTG
CACTTGGAGGGCCCATTCATCAGCCGGGAAAAGCGGGGTGCACACCCCGAGGCCTACCTCCGCTCCTTTG
AAGCCAATGCTTTTCATGATGTGTTGGCCACATATGGGCCCCTGGACAACGTCTGCATTGTGACACTTGC
CCCTGAACTAGACCGGAGCCATGAAGTGATCCAGGCACTGACAGCCCAAGGCATCCGTGTGTCTCTAGGG
CACTCAGTGGCCGACCTGCGGGCTGCAGAAGTGGCAGTGCAGAGTGGGGCCACCTTCATCACTCACCTCT
TCAATGCCATGTTGCCTTTCCACCACCGTGACCCAGGCATAGTAGGGCTTCTGACCAGTGACCAGCTGCC
CCCAGGCCACTGCATCTTCTATGGGATGATTGCTGATGGCATACACACCAACCCTGCAGCTCTGCGCATT
GCTCACCGGGCCCATCCCCAGGGGCTGGTGCTGGTCACTGATGCTGTCCCTGCCCTGGGCTTGGGCAATG
GCCGCCATACACTGGGACAGCAGGAGGTGGAGGTAGATGGGCTAATAGCGTACATTGCAGGCACCAAGAC
ACTGGGTGGCAGCATAGCCCCCATGGATGTGTGCGTCCGGCATTTCCTGCAGGCTACAGGCTGTAGTGTG
GAGTCGGCCCTGGAAGCTGCCTCCCTCCACCCTGCCCAGATGCTGGGGCTGGAGAAGACCAAGGGGAGCC
TGGACTTTGGTGCTGATGCAGACTTTGTGGTGCTCGACGACACTCTCCATGTCCAGGCCACTTACATCTC
TGGTGAATTGGTGTGGCAGGCAGAGGAAGCTGGGCCGTGA

Translation (409 aa):
MRSGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDV
QINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVTSPPEVYHKVLPQIPVKSGGPHGAGVLGV
HLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIVTLAPELDRSHEVIQALTAQGIRVSLG
HSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRI
AHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGSIAPMDVCVRHFLQATGCSV
ESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGELVWQAEEAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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